WtMTA: introns: 5 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

5 rows where transcript_id = 29262647

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
163114495	GT-AG	1.000000099473604e-05	791	rna-gnl\|WGS:VYZK\|PRUHIM_R11682_mrna 29262647	1	10335210	10336000	Prunella himalayana 670356	CAG\|GTGAGGTCTC...ATTACTCTGATG/ATTACTCTGATG...TACAG\|GCT	2	1	21.493
163114496	GT-AG	1.000000099473604e-05	1541	rna-gnl\|WGS:VYZK\|PRUHIM_R11682_mrna 29262647	2	10336124	10337664	Prunella himalayana 670356	CAT\|GTAAGTGAGC...TTTCTTTTAAAT/GTGTAACTAACT...TCTAG\|GGA	2	1	37.323
163114497	GT-AG	1.631595762697605e-05	1461	rna-gnl\|WGS:VYZK\|PRUHIM_R11682_mrna 29262647	3	10337820	10339280	Prunella himalayana 670356	AAG\|GTATTAAATT...GCTTCCTCCACT/ATACTACTAAAA...TTCAG\|ATT	1	1	57.272
163114498	GT-AG	1.000000099473604e-05	1321	rna-gnl\|WGS:VYZK\|PRUHIM_R11682_mrna 29262647	4	10339328	10340648	Prunella himalayana 670356	AAG\|GTACAAGCTT...CATACCATAGTT/TAGTTAGTAATT...CACAG\|GGT	0	1	63.32
163114499	GT-AG	1.000000099473604e-05	1088	rna-gnl\|WGS:VYZK\|PRUHIM_R11682_mrna 29262647	5	10340782	10341869	Prunella himalayana 670356	CTG\|GTAGGAGTGT...ATTTTCTTCTCT/TGTCTGTTAAAA...TGTAG\|ATG	1	1	80.438

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);