WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 29262633

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
163114420	GT-AG	6.358683661671564e-05	6704	rna-gnl\|WGS:VYZK\|PRUHIM_R08693_mrna 29262633	1	4331782	4338485	Prunella himalayana 670356	CAG\|GTACTGTGCA...TAGTCTTTGATT/ATTTCTTTTATT...TTTAG\|AAT	2	1	9.625
163114421	GT-AG	0.0002832389736019	9775	rna-gnl\|WGS:VYZK\|PRUHIM_R08693_mrna 29262633	2	4321929	4331703	Prunella himalayana 670356	CGG\|GTATGTATAT...CTGCTCTTCTTT/TGTGCATTAAGA...CCCAG\|GGA	2	1	17.528
163114422	GT-AG	1.000000099473604e-05	1502	rna-gnl\|WGS:VYZK\|PRUHIM_R08693_mrna 29262633	3	4320327	4321828	Prunella himalayana 670356	AAG\|GTGGGGATGC...TCCATTCTGACT/TCCATTCTGACT...TTTAG\|ACT	0	1	27.66
163114423	GT-AG	0.0030245887505242	788	rna-gnl\|WGS:VYZK\|PRUHIM_R08693_mrna 29262633	4	4319382	4320169	Prunella himalayana 670356	CAG\|GTAACTTCTC...TATATCTAAACT/CTATATCTAAAC...TATAG\|GTA	1	1	43.566
163114424	GT-AG	1.000000099473604e-05	9783	rna-gnl\|WGS:VYZK\|PRUHIM_R08693_mrna 29262633	5	4309495	4319277	Prunella himalayana 670356	ATG\|GTAAGTGATT...TCTCTCTTGACA/TTGTTACTAACT...TACAG\|ACC	0	1	54.103
163114425	GT-AG	0.0029349965580315	918	rna-gnl\|WGS:VYZK\|PRUHIM_R08693_mrna 29262633	6	4308470	4309387	Prunella himalayana 670356	AAG\|GTATGTTGCA...AATGTTTTAAAA/TTAAAACTCATC...CTCAG\|CTT	2	1	64.944
163114426	GT-AG	0.0016079576045614	1559	rna-gnl\|WGS:VYZK\|PRUHIM_R08693_mrna 29262633	7	4306703	4308261	Prunella himalayana 670356	GAC\|GTACGTATCC...TTTTTGTTAATT/TTTTTGTTAATT...TGCAG\|AAA	0	1	86.018

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);