WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 28932411

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
161301471	GT-AG	4.4857003693492805e-05	497	rna-XM_006370108.2 28932411	2	41176092	41176588	Populus trichocarpa 3694	GAG\|GTTTGCCATT...AACATTTTATTT/ATTTTATTTATT...TTCAG\|GAT	0	1	68.459
161301472	GT-AG	0.0051120436878711	730	rna-XM_006370108.2 28932411	3	41175238	41175967	Populus trichocarpa 3694	AAT\|GTACATCTCC...TATTCCATAATA/GAGTCTCTAATT...TACAG\|ATC	1	1	71.181
161301473	GT-AG	0.0002184057400238	4988	rna-XM_006370108.2 28932411	4	41170167	41175154	Populus trichocarpa 3694	GAG\|GTACTTTGGC...CTGTTTTTATTG/TTTTTATTGATT...TGCAG\|GTG	0	1	73.003
161301474	GT-AG	1.000000099473604e-05	639	rna-XM_006370108.2 28932411	5	41169286	41169924	Populus trichocarpa 3694	GGG\|GTGAGTGCCT...GATGTTTTATTG/TGATGTTTTATT...TTCAG\|GTC	2	1	78.314
161301475	GT-AG	1.000000099473604e-05	2989	rna-XM_006370108.2 28932411	6	41166210	41169198	Populus trichocarpa 3694	CAG\|GTGATATGCA...TTTGCTTTGTCT/TAAAATCTCATC...TGCAG\|GGT	2	1	80.224
161301476	GT-AG	0.1832100310768701	589	rna-XM_006370108.2 28932411	7	41165521	41166109	Populus trichocarpa 3694	GAG\|GTATTTTTCA...TTCCTTTTAACC/TTCCTTTTAACC...CCCAG\|ATG	0	1	82.419
161301477	GT-AG	1.000000099473604e-05	93	rna-XM_006370108.2 28932411	8	41165226	41165318	Populus trichocarpa 3694	CAG\|GTGAGTATTC...TTTTCTTTGGTC/AATTTTCTGAGA...TTCAG\|GCT	1	1	86.853
161317255	GT-AG	1.000000099473604e-05	6922	rna-XM_006370108.2 28932411	1	41179412	41186333	Populus trichocarpa 3694	GAG\|GTAAGGTCAT...TTGTTTTTGTTG/TGGTTGTTTACT...ACCAG\|TTT		0	8.67

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);