WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 28932382

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
161301053	GT-AG	0.0001589077869898	158	rna-XM_006369050.2 28932382	1	13836518	13836675	Populus trichocarpa 3694	AGG\|GTAAGCGTTT...TTTGTTTTGATT/TTTGTTTTGATT...GGCAG\|ATA	0	1	24.548
161301054	GT-AG	1.000000099473604e-05	159	rna-XM_006369050.2 28932382	2	13836731	13836889	Populus trichocarpa 3694	TAG\|GTAAGTGGGA...TTTGCCTAAACA/CTTTGCCTAAAC...AACAG\|AAA	1	1	25.732
161301055	GT-AG	1.000000099473604e-05	223	rna-XM_006369050.2 28932382	3	13837066	13837288	Populus trichocarpa 3694	AAG\|GTCAATCCTA...ATCTTTTTATCA/CTTTTTATCATA...TGCAG\|ATG	0	1	29.522
161301056	GT-AG	1.000000099473604e-05	93	rna-XM_006369050.2 28932382	4	13837454	13837546	Populus trichocarpa 3694	GAG\|GTATGACACT...TTGTTTTTGGCT/TGGCTTGTTATA...GGTAG\|GTT	0	1	33.075
161301057	GT-AG	3.580361999799471e-05	133	rna-XM_006369050.2 28932382	5	13837843	13837975	Populus trichocarpa 3694	AAG\|GTAATCATGT...ATTGTCTGGATT/ATAACTCTGAAA...GACAG\|AGG	2	1	39.449
161301058	GT-AG	4.7674214333804426e-05	114	rna-XM_006369050.2 28932382	6	13838293	13838406	Populus trichocarpa 3694	ATG\|GTAAGCTCCT...GAGTTCTTCATA/GAGTTCTTCATA...TGCAG\|GAG	1	1	46.275
161301059	GT-AG	0.1291797504114113	110	rna-XM_006369050.2 28932382	7	13838631	13838740	Populus trichocarpa 3694	CAG\|GTACCTTAGC...TAATTCTTACCA/TTAATTCTTACC...GACAG\|GTT	0	1	51.098
161301060	GT-AG	1.05213036472893e-05	133	rna-XM_006369050.2 28932382	8	13840664	13840796	Populus trichocarpa 3694	CAG\|GTATGGCCTA...GATTTCTTGCTA/AAGTAATTGATT...TATAG\|GTA	0	1	92.506

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);