WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 28932377

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
161300998	GT-AG	1.4645630266311027e-05	347	rna-XM_002298835.3 28932377	1	38140990	38141336	Populus trichocarpa 3694	ATG\|GTAATTTCAC...CGTTTCTCAATT/TCGTTTCTCAAT...TACAG\|AAA	1	1	3.327
161300999	GT-AG	0.0050259871938211	664	rna-XM_002298835.3 28932377	2	38143748	38144411	Populus trichocarpa 3694	AAG\|GTATTCCTTT...ATATGGTTAATT/ATATGGTTAATT...GACAG\|GTT	0	1	48.393
161301000	GT-AG	0.0548180834861866	928	rna-XM_002298835.3 28932377	3	38145733	38146660	Populus trichocarpa 3694	CAG\|GTATCATCTA...CAGTCCATAATT/TTGATTTTCAAA...TATAG\|GGA	1	1	73.084
161301001	GT-AG	0.0166010472681285	86	rna-XM_002298835.3 28932377	4	38147011	38147096	Populus trichocarpa 3694	GCA\|GTATGATTTC...ATGTTATTAATT/ATGTTATTAATT...TTTAG\|GAT	0	1	79.626
161301002	GT-AG	7.568756090588964e-05	485	rna-XM_002298835.3 28932377	5	38147277	38147761	Populus trichocarpa 3694	AAA\|GTACGTGTTC...ATGTTCTTCATG/ATGTTCTTCATG...TGTAG\|GAA	0	1	82.991
161301003	GT-AG	0.0013818152550094	276	rna-XM_002298835.3 28932377	6	38147926	38148201	Populus trichocarpa 3694	CAG\|GTATGCAACT...AATGCGTTAACG/CACAAGCTTATT...TGCAG\|TAA	2	1	86.056
161301004	GT-AG	0.0063329659539952	72	rna-XM_002298835.3 28932377	7	38148294	38148365	Populus trichocarpa 3694	AAG\|GTATATTCGG...TGTTTCTGAACT/TTGTTTCTGAAC...TGTAG\|TTC	1	1	87.776
161317224	GT-AG	8.649380587768021e-05	1115	rna-XM_002298835.3 28932377	8	38148477	38149591	Populus trichocarpa 3694	AAG\|GTTTGCCTTC...ATTATCATGAAA/TTAATTATCATG...GTCAG\|GTT		0	89.85

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);