introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 28258301

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
156963691 GT-AG 0 9.977329096634964e-05 93 rna-XM_027180274.1 28258301 1 683485 683577 Pocillopora damicornis 46731 TCG|GTAAATGTTC...TTTTTTTTAAAA/TTTTTTTTAAAA...TGCAG|AGA 1 1 3.799
156963692 GT-AG 0 1.000000099473604e-05 373 rna-XM_027180274.1 28258301 2 683775 684147 Pocillopora damicornis 46731 AAG|GTGGGTTAGG...TGTTTATTATTT/ATTATTTTCAAT...TCAAG|GTT 0 1 22.507
156963693 GT-AG 0 1.000000099473604e-05 242 rna-XM_027180274.1 28258301 3 684181 684422 Pocillopora damicornis 46731 AAG|GTGAGGATGT...TTGATTTTATTT/GTTCTACTTATT...TGCAG|GAC 0 1 25.641
156963694 GT-AG 0 1.000000099473604e-05 448 rna-XM_027180274.1 28258301 4 684619 685066 Pocillopora damicornis 46731 CAG|GTGAATACAC...CTTTCTTTATTC/ATTATCCTCATA...AACAG|ATG 1 1 44.255
156963695 GT-AG 0 1.000000099473604e-05 552 rna-XM_027180274.1 28258301 5 685179 685730 Pocillopora damicornis 46731 TAG|GTGAGTAAGA...TAATTGTTAAAT/TAATTGTTAAAT...TTAAG|GGC 2 1 54.891
156963696 GT-AG 0 0.0050171844420663 166 rna-XM_027180274.1 28258301 6 685901 686066 Pocillopora damicornis 46731 ATG|GTACGTTTTG...TTCTTTTTATCT/TTTCTTTTTATC...TACAG|TTG 1 1 71.035
156963697 GT-AG 0 0.0002174829802854 601 rna-XM_027180274.1 28258301 7 686106 686706 Pocillopora damicornis 46731 GAG|GTATGTCAGT...TTTCTCTTTATG/AAAGATCTCATT...TCTAG|ATA 1 1 74.739
156963698 GT-AG 0 1.000000099473604e-05 515 rna-XM_027180274.1 28258301 8 686802 687316 Pocillopora damicornis 46731 AAG|GTAATAACAC...GTTTTTTTAAGA/ATGTTCTTCAAT...TTCAG|GAA 0 1 83.761

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);