WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 27592240

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
153480541	GT-AG	1.000000099473604e-05	138	rna-XM_024517803.1 27592240	1	2512749	2512886	Physcomitrium patens 3218	AAC\|GTGAGTTGCT...TTTAGTTTGATT/TTTAGTTTGATT...TGTAG\|GGT	1	1	1.073
153480542	GT-AG	0.0013908454906377	575	rna-XM_024517803.1 27592240	2	2512118	2512692	Physcomitrium patens 3218	CAG\|GTATGTTCTG...TTTTCTTTCATG/TTTTCTTTCATG...TGCAG\|GCT	0	1	1.931
153480543	GT-AG	5.119803723191384e-05	124	rna-XM_024517803.1 27592240	3	2511870	2511993	Physcomitrium patens 3218	TAG\|GTGTGCATTG...ATGACGTTAGTA/AATGGGCTTACA...GACAG\|GGT	1	1	3.831
153480544	GT-AG	1.000000099473604e-05	127	rna-XM_024517803.1 27592240	4	2511055	2511181	Physcomitrium patens 3218	CAG\|GTAAAGTGTT...TCTTTTTCAATG/ATCTTTTTCAAT...AACAG\|ATA	2	1	14.375
153480545	GT-AG	1.000000099473604e-05	179	rna-XM_024517803.1 27592240	5	2509669	2509847	Physcomitrium patens 3218	GAG\|GTAAGAGTAT...GAAGTTTTGACG/AAGTGTTTCATG...TGAAG\|GTT	0	1	32.874
153480546	GT-AG	0.0003311839809788	380	rna-XM_024517803.1 27592240	6	2508929	2509308	Physcomitrium patens 3218	GCT\|GTAAGTCCGT...AAATCCTTAAAT/TTTGATGTAATC...TGCAG\|ATT	0	1	38.391
153480547	GT-AG	1.000000099473604e-05	225	rna-XM_024517803.1 27592240	7	2507602	2507826	Physcomitrium patens 3218	CAG\|GTTCGCAAAT...TTCTTGTTAATC/TTCTTGTTAATC...TGCAG\|AAT	1	1	55.28
153480548	GT-AG	1.000000099473604e-05	185	rna-XM_024517803.1 27592240	8	2507163	2507347	Physcomitrium patens 3218	CAG\|GTAATTTCGT...ATTGTCGTAAAC/ACACGTTTGAGT...TTCAG\|GTG	0	1	59.172

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);