WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 27539181

descending

id ▼	dinucleotide_pair	is_minor	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
153300926	GT-AG	0	6.870925890742058e-05	104	TCONS_00000001.p1 27539181	1	5268	5371	Physarum polycephalum 5791	GAA\|GTACTCGTTT...ATTTATTTTATG...TTTAG\|AAT	0	1	3.274
153300927	GT-AG	0	0.0003874593758193	196	TCONS_00000001.p1 27539181	2	5673	5868	Physarum polycephalum 5791	CGG\|GTATGAACAT...CTCATTTTGCTA...TATAG\|ACT	1	1	33.135
153300928	GT-AG	0	0.0012568062170599	403	TCONS_00000001.p1 27539181	3	5908	6310	Physarum polycephalum 5791	TAT\|GTCACCCCCT...TATTTTTTAACG...TTTAG\|GTG	1	1	37.004
153300929	GT-AG	0	0.0027214271578916	304	TCONS_00000001.p1 27539181	4	6499	6802	Physarum polycephalum 5791	CAG\|GTACCCTTCT...CCCTCCTTCTTA...TTTAG\|GAC	0	1	55.655
153300930	GT-AG	1	99.61468632909124	290	TCONS_00000001.p1 27539181	5	6908	7197	Physarum polycephalum 5791	AGA\|GTATCCCTTT...TTCAATTTGAAA...ATCAG\|AAA	0	1	66.071
153300931	GT-AG	0	0.5423578736695813	907	TCONS_00000001.p1 27539181	6	7319	8225	Physarum polycephalum 5791	AAA\|GTACCTCCCT...TCCTTTTTGAAC...GGAAG\|TCG	1	1	78.075
153300932	GT-AG	0	0.0310213523400547	208	TCONS_00000001.p1 27539181	7	8317	8524	Physarum polycephalum 5791	TAG\|GTAGCTTCTT...TTTTTTTTGTTT...TTTAG\|GCT	2	1	87.103

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);