introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
7 rows where transcript_id = 27539158
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
153300752 | GT-AG | 0 | 3.351223944536205e-05 | 279 | TCONS_00000109.p1 27539158 | 1 | 485548 | 485826 | Physarum polycephalum 5791 | ATA|GTAATCCCCC...CAACCCTTTCCG...TCTAG|TTA | 2 | 1 | 9.428 |
153300753 | GT-AG | 0 | 0.001690869018892 | 394 | TCONS_00000109.p1 27539158 | 2 | 485025 | 485418 | Physarum polycephalum 5791 | CAA|GTATGTGCAG...CACCCCTTCACG...TATAG|CTC | 2 | 1 | 17.275 |
153300754 | GT-AG | 0 | 64.57073652521149 | 216 | TCONS_00000109.p1 27539158 | 3 | 484707 | 484922 | Physarum polycephalum 5791 | TGA|GTATCCAGCC...TTTTTCTCAACA...TTCAG|AAA | 2 | 1 | 23.479 |
153300755 | GT-AG | 0 | 1.000000099473604e-05 | 555 | TCONS_00000109.p1 27539158 | 4 | 484054 | 484608 | Physarum polycephalum 5791 | CAG|GTTTGTGCAC...GAGTAATGGAGA...TTTAG|ATG | 1 | 1 | 29.44 |
153300756 | GT-AG | 0 | 1.000000099473604e-05 | 107 | TCONS_00000109.p1 27539158 | 5 | 483891 | 483997 | Physarum polycephalum 5791 | AAG|GTACAACCCT...TTAGATTTGTTC...TGCAG|GTA | 0 | 1 | 32.847 |
153300757 | GT-AG | 0 | 1.000000099473604e-05 | 811 | TCONS_00000109.p1 27539158 | 6 | 482603 | 483413 | Physarum polycephalum 5791 | AGA|GTACGTACTA...CTACCCTCATTT...GTTAG|TCA | 0 | 1 | 61.861 |
153300758 | GT-AG | 0 | 0.1368938574630063 | 228 | TCONS_00000109.p1 27539158 | 7 | 481762 | 481989 | Physarum polycephalum 5791 | TCT|GTAGGTTACG...TTGTCCTTAACA...GTTAG|ATA | 1 | 1 | 99.148 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);