introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 27391045

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
152560988 GT-AG 0 1.000000099473604e-05 118 rna-XM_008803790.3 27391045 1 20933107 20933224 Phoenix dactylifera 42345 AAG|GTTGGGTGCT...GTTATTTTATAT/TTTGGACTAATA...TATAG|GAG 1 1 70.044
152560989 GT-AG 0 0.0018646890345978 72 rna-XM_008803790.3 27391045 2 20932850 20932921 Phoenix dactylifera 42345 GGG|GTATGTAATT...CTTTTCTTATAT/CCTTTTCTTATA...TTCAG|GTT 0 1 75.082
152560990 GT-AG 0 1.000000099473604e-05 104 rna-XM_008803790.3 27391045 3 20932674 20932777 Phoenix dactylifera 42345 CAG|GTTAGGAAAT...TTGTTCTTTGCA/CTTTTTTGTACA...TCCAG|ATA 0 1 77.042
152560991 GT-AG 0 1.4846266211165484e-05 84 rna-XM_008803790.3 27391045 4 20932437 20932520 Phoenix dactylifera 42345 ATG|GTCTGTGCCT...TGATTCTTATAG/GTGATTCTTATA...CCCAG|AGG 0 1 81.209
152560992 GT-AG 0 0.0152192851656615 129 rna-XM_008803790.3 27391045 5 20932144 20932272 Phoenix dactylifera 42345 CAA|GTATGTTTCC...GATTCATTACTA/TTATGATTCATT...GACAG|GCC 2 1 85.675
152560993 GT-AG 0 0.0117239566578129 15506 rna-XM_008803790.3 27391045 6 20916490 20931995 Phoenix dactylifera 42345 AAG|GTATATTTTA...GATTTTGTGACC/GATTTTGTGACC...TGCAG|GTC 0 1 89.706
152560994 GT-AG 0 0.0003112970287365 226 rna-XM_008803790.3 27391045 7 20916141 20916366 Phoenix dactylifera 42345 AAG|GTTTGCTGAA...ATTTGTTTGACT/ATTTGTTTGACT...CCCAG|ATC 0 1 93.056
152560995 GT-AG 0 1.0001530311967988 100 rna-XM_008803790.3 27391045 8 20915953 20916052 Phoenix dactylifera 42345 TAG|GTATCGTTTT...TTTTGTTTAACT/TTTTGTTTAACT...AACAG|GTG 1 1 95.452

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);