introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 27391031

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
152560814 GT-AG 0 1.000000099473604e-05 120 rna-XM_039126651.1 27391031 1 11949224 11949343 Phoenix dactylifera 42345 AAG|GTCAGAATTT...GTCTTTTTATTA/TTATTACTGATT...AAAAG|GCT 1 1 71.465
152560815 GT-AG 0 1.000000099473604e-05 73 rna-XM_039126651.1 27391031 2 11948951 11949023 Phoenix dactylifera 42345 GAG|GTGGTCAAGT...GTCCTTTTAATT/TTAATTTTCATG...ATCAG|GAC 0 1 76.57
152560816 GT-AG 0 1.000000099473604e-05 93 rna-XM_039126651.1 27391031 3 11948786 11948878 Phoenix dactylifera 42345 CAG|GTTGTGAACT...GTTGCTTTTGCA/ATATGTTTAAAT...TGCAG|ATA 0 1 78.407
152560817 GT-AG 0 1.3825656998937924e-05 83 rna-XM_039126651.1 27391031 4 11948550 11948632 Phoenix dactylifera 42345 ATG|GTCTGGATCT...GTCTTTTTAATC/TTTTTTCTTATA...TCCAG|AGG 0 1 82.312
152560818 GT-AG 0 0.001161431859076 173 rna-XM_039126651.1 27391031 5 11948213 11948385 Phoenix dactylifera 42345 CAG|GTATGTCTTT...TATTCATTGACC/CATTTATTTATT...AACAG|GAC 2 1 86.498
152560819 GT-AG 0 0.000275454664425 4579 rna-XM_039126651.1 27391031 6 11943486 11948064 Phoenix dactylifera 42345 AAG|GTATTTATTT...GTTGGCATGACT/ACTTGTCTCATG...TGCAG|GTC 0 1 90.276
152560820 GT-AG 0 1.000000099473604e-05 82 rna-XM_039126651.1 27391031 7 11943281 11943362 Phoenix dactylifera 42345 AAG|GTTAGCTGAA...TCATCTTTACCC/GTTTGTTTCATC...CACAG|GTC 0 1 93.415
152560821 GT-AG 0 1.000000099473604e-05 103 rna-XM_039126651.1 27391031 8 11943090 11943192 Phoenix dactylifera 42345 TAG|GTGATGTTTT...TCAATTTTGATT/TTTGATTTCATT...AATAG|GTG 1 1 95.661

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);