WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 27368714

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
152379162	GT-AG	1.000000099473604e-05	31815	rna-XM_032638539.1 27368714	1	32712375	32744189	Phocoena sinus 42100	CAG\|GTGAGGGGCG...TTTTTTTTAATA/TTTTTTTTAATA...TTTAG\|ACC	0	1	4.079
152379163	GT-AG	0.0001150900408264	923	rna-XM_032638539.1 27368714	2	32744345	32745267	Phocoena sinus 42100	ACT\|GTAAGTTTAA...ACTGACTTAGTT/TATATACTGACT...TCTAG\|GAG	2	1	6.782
152379164	GT-AG	1.000000099473604e-05	3617	rna-XM_032638539.1 27368714	3	32745350	32748966	Phocoena sinus 42100	CAG\|GTGAGTTGAT...TTTTTCTTCTTT/GCCTGTTTTATG...TTAAG\|GAG	0	1	8.211
152379165	GT-AG	9.865516680821222e-05	6285	rna-XM_032638539.1 27368714	4	32749100	32755384	Phocoena sinus 42100	AAG\|GTAAGCTTAA...ACTGTTTTATTT/AACTGTTTTATT...TCTAG\|TCA	1	1	10.53
152379166	GT-AG	1.000000099473604e-05	21957	rna-XM_032638539.1 27368714	5	32755588	32777544	Phocoena sinus 42100	GAG\|GTAAGTAAAG...TTCTTTTTGACT/TTCTTTTTGACT...GATAG\|ATT	0	1	14.069
152379167	GT-AG	1.000000099473604e-05	5736	rna-XM_032638539.1 27368714	6	32777682	32783417	Phocoena sinus 42100	TTG\|GTAAGTATAT...GTTGCTTTAAAT/AAATGTTTTACC...TATAG\|GGA	2	1	16.457
152379168	GT-AG	1.000000099473604e-05	4559	rna-XM_032638539.1 27368714	7	32783560	32788118	Phocoena sinus 42100	GAA\|GTGAGTAGTT...TCTTCCCTATTT/TGTTTCCAAACT...AACAG\|GCA	0	1	18.933

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);