WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 27300380

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
151910930	GT-AG	1.000000099473604e-05	10833	rna-XM_031603380.1 27300380	1	13963	24795	Phasianus colchicus 9054	TGT\|GTGAGTACCT...ATCTCTCTAATT/ATCTCTCTAATT...TGCAG\|TAA	1	1	11.874
151910931	GT-AG	1.000000099473604e-05	549	rna-XM_031603380.1 27300380	2	24845	25393	Phasianus colchicus 9054	ATG\|GTAAGATTTT...CAGATCTTGCTT/CCTCTGCTGATG...TCCAG\|GTT	2	1	17.211
151910932	GT-AG	8.902525036728412e-05	1952	rna-XM_031603380.1 27300380	3	25490	27441	Phasianus colchicus 9054	TCT\|GTAAGTACTA...TGTATTTTGAAG/TGAAGCCTCACA...CCTAG\|CTA	2	1	27.669
151910933	GT-AG	1.000000099473604e-05	6966	rna-XM_031603380.1 27300380	4	27564	34529	Phasianus colchicus 9054	ATG\|GTACGTGCCT...GGTAACTTATCT/TGTCTATGTATT...TCCAG\|GTG	1	1	40.959
151910934	GT-AG	9.728927024495316e-05	1043	rna-XM_031603380.1 27300380	5	34643	35685	Phasianus colchicus 9054	AAG\|GTAGGCTCCT...TGCTTCTAAATG/ATGCTTCTAAAT...TGCAG\|CTT	0	1	53.268
151910935	GT-AG	1.000000099473604e-05	1688	rna-XM_031603380.1 27300380	6	35770	37457	Phasianus colchicus 9054	AAT\|GTAAGTGATG...ATGACTTTATAT/AGTCTATTCATG...CCAAG\|GCC	0	1	62.418
151910936	GT-AG	1.000000099473604e-05	6115	rna-XM_031603380.1 27300380	7	37575	43689	Phasianus colchicus 9054	CGG\|GTAAGACCAA...ATAGCCTGAGTA/CATAGCCTGAGT...TCCAG\|ATG	0	1	75.163
151910937	GT-AG	1.000000099473604e-05	666	rna-XM_031603380.1 27300380	8	43804	44469	Phasianus colchicus 9054	GAG\|GTTAGCAGCT...GCTGTCTGATTG/TGCTGTCTGATT...TCCAG\|GTG	0	1	87.582

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);