introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 27300369

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Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
151910842 GT-AG 0 1.000000099473604e-05 3041 rna-XM_031587976.1 27300369 2 2626912 2629952 Phasianus colchicus 9054 TGG|GTGAGTAGTT...CTCATCTCAGTG/AATTTACTCATC...TGCAG|GAA 1 1 25.529
151910843 GT-AG 0 1.000000099473604e-05 3428 rna-XM_031587976.1 27300369 3 2623380 2626807 Phasianus colchicus 9054 ATG|GTAAGTTGAC...TTTGTCTGAACT/GTTTGTCTGAAC...TTCAG|GGA 0 1 33.384
151910844 GT-AG 0 1.000000099473604e-05 819 rna-XM_031587976.1 27300369 4 2622453 2623271 Phasianus colchicus 9054 AGG|GTAAGATTTG...TCTGTTTTGATC/TCTGTTTTGATC...TCTAG|GAA 0 1 41.541
151910845 GT-AG 0 1.0625610432573646e-05 804 rna-XM_031587976.1 27300369 5 2621494 2622297 Phasianus colchicus 9054 AAT|GTAAGTTGAA...GAATTCTTTGCT/GTGACTCTCACT...TTCAG|GCC 2 1 53.248
151910846 GT-AG 0 1.000000099473604e-05 3062 rna-XM_031587976.1 27300369 6 2618341 2621402 Phasianus colchicus 9054 ATT|GTAAGTACAC...TGCTCTTTCATC/TGCTCTTTCATC...CTTAG|CCA 0 1 60.121
151910847 GT-AG 0 1.000000099473604e-05 1564 rna-XM_031587976.1 27300369 7 2616677 2618240 Phasianus colchicus 9054 CAG|GTAAGAAGAA...TTTTTCATGATT/TTTTTTCTAATT...TGAAG|CTG 1 1 67.674
151910848 GT-AG 0 1.000000099473604e-05 5431 rna-XM_031587976.1 27300369 8 2611033 2616463 Phasianus colchicus 9054 CAG|GTAGGTGACA...AAATTCTTTGCA/CAGACATTAAAA...TGCAG|GAG 1 1 83.761
151911033 GT-AG 0 1.000000099473604e-05 2756 rna-XM_031587976.1 27300369 1 2630215 2632970 Phasianus colchicus 9054 CCG|GTAAGAGGGA...CAGGCCTTAGGA/GACTTTCTAATG...ATTAG|ACT   0 10.952

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);