introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

12 rows where transcript_id = 27300346

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
151910661 GT-AG 0 1.000000099473604e-05 2711 rna-XM_031603071.1 27300346 1 11579057 11581767 Phasianus colchicus 9054 CAG|GTGAGAGGGG...TGTTTCTTAGAG/TAGAGTCTAATT...TATAG|TAT 2 1 3.982
151910662 GT-AG 0 2.9006323408015347e-05 1428 rna-XM_031603071.1 27300346 2 11581825 11583252 Phasianus colchicus 9054 AAC|GTAAGTTAAC...ATTCTCTAAACA/TCATTACTGATT...AACAG|CTT 2 1 7.643
151910663 GT-AG 0 0.0011660820130017 776 rna-XM_031603071.1 27300346 3 11583594 11584369 Phasianus colchicus 9054 CAG|GTATGTTAAG...TTCTTCCTAGCT/CTGAGGCTAAGT...TTCAG|ATA 1 1 29.544
151910664 GT-AG 0 1.000000099473604e-05 20307 rna-XM_031603071.1 27300346 4 11584550 11604856 Phasianus colchicus 9054 TTG|GTGAGTATAT...TTTTTTTTAGTT/TTTTTTTTTAGT...AATAG|AAG 1 1 41.105
151910665 GT-AG 0 0.0022291808181283 4173 rna-XM_031603071.1 27300346 5 11604928 11609100 Phasianus colchicus 9054 TCA|GTAAGTTTTA...CTTTTTTTATTT/ATCTTTTTCATT...TTCAG|GGT 0 1 45.665
151910666 GT-AG 0 1.000000099473604e-05 897 rna-XM_031603071.1 27300346 6 11609230 11610126 Phasianus colchicus 9054 CAG|GTAAAACATC...GTATTCTTGCTT/GCTCTTTTTACA...ATTAG|ATT 0 1 53.95
151910667 GT-AG 0 1.000000099473604e-05 3547 rna-XM_031603071.1 27300346 7 11610190 11613736 Phasianus colchicus 9054 GAG|GTAAGAATTA...GTTTCTTTAACT/AATGTGCTCACC...TTCAG|ATC 0 1 57.996
151910668 GT-AG 0 1.000000099473604e-05 21038 rna-XM_031603071.1 27300346 8 11613852 11634889 Phasianus colchicus 9054 TAG|GTAAGATTTA...ACCTCATTGACT/ATGCACCTCATT...AACAG|AAG 1 1 65.382
151910669 GT-AG 0 1.000000099473604e-05 10704 rna-XM_031603071.1 27300346 9 11635000 11645703 Phasianus colchicus 9054 CAG|GTAAATTGAT...TTTTCCATAAAC/GAAATTCTAATT...TTTAG|GAT 0 1 72.447
151910670 GT-AG 0 1.000000099473604e-05 13396 rna-XM_031603071.1 27300346 10 11645780 11659175 Phasianus colchicus 9054 ATG|GTAAGTTTAA...GACTTCTGAAAA/TGTTGGTTTATT...TTCAG|AGC 1 1 77.328
151910671 GT-AG 0 1.8974384400165085e-05 34965 rna-XM_031603071.1 27300346 11 11659304 11694268 Phasianus colchicus 9054 CAA|GTAAGTACTT...TCTTTCTTACTT/TTCTTTCTTACT...TCTAG|TCT 0 1 85.549
151910672 GT-AG 0 1.000000099473604e-05 34477 rna-XM_031603071.1 27300346 12 11694365 11728841 Phasianus colchicus 9054 CAG|GTAAGTAAAG...ATTTCCTTTTTT/TATATATTAATT...ACTAG|GAA 0 1 91.715

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);