introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 27300316

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id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
151910224 GT-AG 0 1.000000099473604e-05 10519 rna-XM_031593485.1 27300316 1 7956603 7967121 Phasianus colchicus 9054 AAG|GTGGGCGCCG...TCCCACTTAATC/CACTTAATCATA...TTCAG|CTC 1 1 22.605
151910225 GT-AG 0 1.000000099473604e-05 13162 rna-XM_031593485.1 27300316 2 7943327 7956488 Phasianus colchicus 9054 AAG|GTAGGTTAAA...GTCTTTTTTTCT/AAGGTGCTTACA...GACAG|CTG 1 1 27.118
151910226 GT-AG 0 1.000000099473604e-05 10094 rna-XM_031593485.1 27300316 3 7932589 7942682 Phasianus colchicus 9054 CAG|GTAAGAGGTT...GTGACCTTAGTG/CTTAGTGTAACT...TATAG|GTA 0 1 52.613
151910227 GT-AG 0 1.000000099473604e-05 193 rna-XM_031593485.1 27300316 4 7932258 7932450 Phasianus colchicus 9054 AAA|GTAAGGACAG...ATATATTTAATT/ATATATTTAATT...ATTAG|TGT 0 1 58.076
151910228 GT-AG 0 0.0001882961550021 3215 rna-XM_031593485.1 27300316 5 7928900 7932114 Phasianus colchicus 9054 GAG|GTATGTTGAT...CTATTTTTCTTC/AAATTTATCACC...TACAG|AAC 2 1 63.737
151910229 GT-AG 0 0.0023815738582347 4902 rna-XM_031593485.1 27300316 6 7923830 7928731 Phasianus colchicus 9054 GTG|GTATGTATTG...CAATTCTTGCCT/GTTAGTTTCAGC...TGTAG|GTC 2 1 70.388
151910230 GT-AG 0 1.000000099473604e-05 86 rna-XM_031593485.1 27300316 7 7923635 7923720 Phasianus colchicus 9054 CAG|GTAAGCACAC...TCACCCTTATTT/AAAGTTTTCACC...TCCAG|TGT 0 1 74.703

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);