WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 27151069

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
151209813	GT-AG	1.000000099473604e-05	4533	rna-XM_020721413.1 27151069	2	3581729	3586261	Phalaenopsis equestris 78828	AAG\|GTTGGATTGA...TTATTCTTATAT/CTTATATTTATT...TGTAG\|GCC	1	1	6.347
151209814	GT-AG	0.0001398590083903	4167	rna-XM_020721413.1 27151069	3	3586315	3590481	Phalaenopsis equestris 78828	GTT\|GTAAGTAGTT...GTATTCTTATTG/AGTATTCTTATT...TGCAG\|CCT	0	1	7.692
151209815	GT-AG	0.0033914844652089	182	rna-XM_020721413.1 27151069	4	3590595	3590776	Phalaenopsis equestris 78828	AAA\|GTATGTGCTG...CATATCTTAAAT/CATATCTTAAAT...AACAG\|GGA	2	1	10.561
151209816	GT-AG	0.0018963288140334	1117	rna-XM_020721413.1 27151069	5	3590943	3592059	Phalaenopsis equestris 78828	AAT\|GTAAGTTTTG...CATTTTTTAATT/CATTTTTTAATT...TACAG\|ATT	0	1	14.775
151209817	GT-AG	0.0328595148776337	112	rna-XM_020721413.1 27151069	6	3592375	3592486	Phalaenopsis equestris 78828	GTG\|GTATGTTTTC...TTTATGTTAACT/TTTATGTTAACT...ACCAG\|GTG	0	1	22.772
151209818	GT-AG	1.000000099473604e-05	1566	rna-XM_020721413.1 27151069	7	3592571	3594136	Phalaenopsis equestris 78828	CAG\|GTGGTGTTTG...ATTCTTTGGATT/TTCTGTTTTATG...AGCAG\|GTC	0	1	24.905
151209819	GT-AG	1.000000099473604e-05	121	rna-XM_020721413.1 27151069	8	3594845	3594965	Phalaenopsis equestris 78828	GAG\|GTTTGAACTA...TTTCATTTACCT/CTAGTTTTCATT...TAAAG\|GAT	0	1	42.879
151209820	GT-AG	1.000000099473604e-05	719	rna-XM_020721413.1 27151069	9	3595391	3596109	Phalaenopsis equestris 78828	AAG\|GTCAGCTGCC...TGTTTCTTATTC/CTGTTTCTTATT...GATAG\|GAC	2	1	53.668

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);