introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 27151041

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
151209459 GT-AG 0 0.0132941183679936 3662 rna-XM_020721801.1 27151041 1 46706332 46709993 Phalaenopsis equestris 78828 AAG|GTTTCTACTT...AAGGTTTTGATT/TTTGGTCTAATC...TGCAG|ATG 1 1 1.45
151209460 GT-AG 0 1.000000099473604e-05 380 rna-XM_020721801.1 27151041 2 46705863 46706242 Phalaenopsis equestris 78828 AGG|GTAAGTTAAT...CTATGCTTAGTA/GTGTTTCTGATT...TGCAG|GAG 0 1 3.217
151209461 GT-AG 0 0.0249489858710096 123 rna-XM_020721801.1 27151041 3 46704867 46704989 Phalaenopsis equestris 78828 TTG|GTATTTGTTT...ATTTTTTTAATA/ATTTTTTTAATA...TGTAG|TTT 0 1 20.556
151209462 GT-AG 0 8.809065636402622e-05 90 rna-XM_020721801.1 27151041 4 46704656 46704745 Phalaenopsis equestris 78828 CAG|GTTTTTTTAA...TGTTCCAAAACG/GCCTGTCTGAGA...AACAG|GGA 1 1 22.959
151209463 GT-AG 0 6.932871623750557e-05 289 rna-XM_020721801.1 27151041 5 46704184 46704472 Phalaenopsis equestris 78828 AAG|GTAATTTCCT...TCCCCCTTATTT/TTGGCGCTTACT...TGCAG|CAT 1 1 26.594
151209464 GT-AG 0 0.0002351063224279 71 rna-XM_020721801.1 27151041 6 46703285 46703355 Phalaenopsis equestris 78828 AAG|GTTTGTTTGT...ATTCTCTGAATT/GCTTTTGTGATT...TGCAG|CTA 1 1 43.039
151209465 GT-AG 0 1.3287203959564244e-05 781 rna-XM_020721801.1 27151041 7 46699890 46700670 Phalaenopsis equestris 78828 CAG|GTATTGCAAT...TCGCCATTGATT/CATTGATTCATC...ATCAG|GTC 2 1 94.955
151209466 GT-AG 0 1.000000099473604e-05 73 rna-XM_020721801.1 27151041 8 46699623 46699695 Phalaenopsis equestris 78828 CAG|GTAAGTCCGG...TAATTATTAACT/TAATTATTAACT...TACAG|AGG 1 1 98.808

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);