introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 27151004

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Suggested facets: dinucleotide_pair, score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
151208907 GT-AG 0 1.94685307696595e-05 75 rna-XM_020718720.1 27151004 1 735747 735821 Phalaenopsis equestris 78828 AAG|GTCCTTCTCG...TCTTCTTTGATT/TTGATTCTTATT...TGTAG|GAA 0 1 17.089
151208908 GG-TC 0 1.000000099473604e-05 98 rna-XM_020718720.1 27151004 2 735904 736001 Phalaenopsis equestris 78828 GAA|GGTCTGCTTT...TTTTCCTTTTTT/GATGTTCTAATC...TTGTC|GGT 1 1 34.388
151208909 GT-AG 0 1.000000099473604e-05 1452 rna-XM_020718720.1 27151004 3 736042 737493 Phalaenopsis equestris 78828 GTG|GTCAGTTTCC...TTCTTTTTGATA/CTTTTTTTCATT...TTCAG|CCA 2 1 42.827
151208910 GC-AG 0 1.000000099473604e-05 111 rna-XM_020718720.1 27151004 4 737547 737657 Phalaenopsis equestris 78828 CGG|GCAAGTATCT...ATGTCCTTGTTG/TATAAGTTAATA...CATAG|GAT 1 1 54.008
151208911 GT-AG 0 1.000000099473604e-05 73 rna-XM_020718720.1 27151004 5 737722 737794 Phalaenopsis equestris 78828 GAG|GTGATTTTCT...TTCCTCTTATTT/CTTTTTATTATT...CATAG|GGA 2 1 67.511
151208912 GT-AG 0 1.000000099473604e-05 87 rna-XM_020718720.1 27151004 6 737838 737924 Phalaenopsis equestris 78828 GAA|GTTGGTTATC...GCCACCTTAGAG/GCTTGTTTAATT...TATAG|GCA 0 1 76.582
151208913 GT-AG 0 0.0001817085289749 341 rna-XM_020718720.1 27151004 7 737973 738313 Phalaenopsis equestris 78828 GCT|GTAAGTCATT...TGTTTTTTAAAT/TTTTTGTTTACT...TTTAG|ATT 0 1 86.709

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);