WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 27105632

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
150886848	GT-AG	1.881815732091366e-05	1580	rna-XM_010290379.1 27105632	1	923	2502	Phaethon lepturus 97097	AAG\|GTATGAATAG...CTCTGTTTAACT/CTCTGTTTAACT...CATAG\|AGT	1	1	13.858
150886849	GT-AG	1.000000099473604e-05	1958	rna-XM_010290379.1 27105632	2	4057	6014	Phaethon lepturus 97097	CAG\|GTGAGAGAGA...ACTGCCTTCTCT/TATTTACTGACT...TGTAG\|GAA	1	1	66.128
150886850	GT-AG	1.000000099473604e-05	1172	rna-XM_010290379.1 27105632	3	6149	7320	Phaethon lepturus 97097	AAG\|GTAAGGTTTT...CTTTTTTTAGGT/CCTTTTTTTAGG...TACAG\|ATA	0	1	70.636
150886851	GT-AG	0.0137344359205516	1705	rna-XM_010290379.1 27105632	4	7440	9144	Phaethon lepturus 97097	TCA\|GTATGTATCA...GCGTTTTTGTTT/ACATAATTTATA...TTCAG\|TTG	2	1	74.638
150886852	GT-AG	1.000000099473604e-05	941	rna-XM_010290379.1 27105632	5	9289	10229	Phaethon lepturus 97097	CAC\|GTGAGTTAAG...TATATTTTGTTT/TCTTGTGTAATA...CCCAG\|ATA	2	1	79.482
150886853	GT-AG	0.0006351217403801	1071	rna-XM_010290379.1 27105632	6	10376	11446	Phaethon lepturus 97097	TAG\|GTATGTAAAG...TTGTCTTTATTT/CTTTATTTGATT...TAAAG\|CAA	1	1	84.393
150886854	GT-AG	1.000000099473604e-05	6068	rna-XM_010290379.1 27105632	7	11602	17669	Phaethon lepturus 97097	AAG\|GTAAGTTCAG...AGCTATTTAATG/TTTAGACTAATG...CACAG\|GGC	0	1	89.606
150886855	GT-AG	1.000000099473604e-05	652	rna-XM_010290379.1 27105632	8	17812	18463	Phaethon lepturus 97097	ATG\|GTATGAGTGG...ACTGTTGTAATT/CATAGACTGACA...TTCAG\|GGA	1	1	94.383

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);