WtMTA: introns: 10 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 27105625

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
150886768	GT-AG	4.087668865629439e-05	563	rna-XM_010289384.1 27105625	1	2002	2564	Phaethon lepturus 97097	AAG\|GTATGACTGC...TCTTCCTTTTTT/GAGTATTTAATT...CTTAG\|AGT	1	1	1.731
150886769	GT-AG	1.000000099473604e-05	1336	rna-XM_010289384.1 27105625	2	2714	4049	Phaethon lepturus 97097	AAG\|GTATAAGAAT...TTTTTCTTCTTA/CTTGTTTTCAGC...TCTAG\|GAC	0	1	10.05
150886770	GT-AG	1.000000099473604e-05	922	rna-XM_010289384.1 27105625	3	4126	5047	Phaethon lepturus 97097	GAG\|GTAAGATAGT...TTCTCTTTATCT/TTTCTCTTTATC...TTCAG\|GTG	1	1	14.294
150886771	GT-AG	1.000000099473604e-05	249	rna-XM_010289384.1 27105625	4	5985	6233	Phaethon lepturus 97097	GAA\|GTGGGAAAAG...GGAGAAAGAAAA/AAGAAAAGGAAA...GAAAG\|AGA	2	1	66.611
150886772	GT-AG	1.000000099473604e-05	1190	rna-XM_010289384.1 27105625	5	6241	7430	Phaethon lepturus 97097	AAA\|GTAAGGAAAA...GTTTCCTTTTCT/GTATGTCTCATC...ACTAG\|CCA	0	1	67.002
150886773	GT-AG	1.000000099473604e-05	469	rna-XM_010289384.1 27105625	6	7513	7981	Phaethon lepturus 97097	TAG\|GTGAGAAAAT...TTTTTCTTCTTT/TATGATTTCATT...GTCAG\|ATT	1	1	71.58
150886774	GT-AG	1.000000099473604e-05	293	rna-XM_010289384.1 27105625	7	8047	8339	Phaethon lepturus 97097	CTG\|GTGAGTGTGT...CTTTTCATACCA/TCTCTTTTCATA...TGCAG\|ATC	0	1	75.209
150886775	GT-AG	1.000000099473604e-05	550	rna-XM_010289384.1 27105625	8	8446	8995	Phaethon lepturus 97097	AAG\|GTAATTGTTG...GGAATTTTAATT/GGAATTTTAATT...TCCAG\|CTT	1	1	81.128
150886776	GT-AG	1.000000099473604e-05	1197	rna-XM_010289384.1 27105625	9	9166	10362	Phaethon lepturus 97097	GAG\|GTGAGTCTGT...TTTTTCTTTCCT/TCTTTCCTTACT...TCCAG\|GGA	0	1	90.62
150886777	GT-AG	1.000000099473604e-05	1984	rna-XM_010289384.1 27105625	10	10486	12469	Phaethon lepturus 97097	TTG\|GTGAGTTCCT...GAGTCATTACCT/TTTTGAGTCATT...CCCAG\|TCA	0	1	97.487

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);