introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 27105597

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
150886462 GT-AG 0 0.1319777012329758 529 rna-XM_010286094.1 27105597 1 39519 40047 Phaethon lepturus 97097 CAC|GTATGCATAC...GGTTCTTTATTT/GATTGATTCACT...TGCAG|TAC 0 1 16.588
150886463 GT-AG 0 2.819162487745946e-05 219 rna-XM_010286094.1 27105597 2 39165 39383 Phaethon lepturus 97097 CAG|GTTTGTATTA...ACTCTTTTGAAT/ACTCTTTTGAAT...TTTAG|GCA 0 1 29.312
150886464 GT-AG 0 0.0001175155508655 94 rna-XM_010286094.1 27105597 3 38945 39038 Phaethon lepturus 97097 AAG|GTATTTCCAA...TTACACTTATTC/CACTTATTCATT...TGTAG|GCC 0 1 41.188
150886465 GT-AG 0 1.000000099473604e-05 636 rna-XM_010286094.1 27105597 4 38225 38860 Phaethon lepturus 97097 GAG|GTAAGGGAAA...TTGTTGTTAATA/TTGTTGTTAATA...TACAG|GTT 0 1 49.105
150886466 GT-AG 0 1.000000099473604e-05 549 rna-XM_010286094.1 27105597 5 37619 38167 Phaethon lepturus 97097 AAG|GTTAGTGTGG...TTTTTTTTAACA/TTTTTTTTAACA...TGAAG|ACT 0 1 54.477
150886467 GT-AG 0 1.000000099473604e-05 168 rna-XM_010286094.1 27105597 6 37280 37447 Phaethon lepturus 97097 CAG|GTCAGCTGAA...AGCGTCTCGATA/TGTATAATTACC...CTCAG|GTT 0 1 70.594
150886468 GT-AG 0 1.000000099473604e-05 125 rna-XM_010286094.1 27105597 7 37077 37201 Phaethon lepturus 97097 AAG|GTAAAGTTGT...ACCTTTTTATTG/TTATATTTGACC...TGTAG|GCA 0 1 77.945
150886469 GT-AG 0 0.025028523052011 1633 rna-XM_010286094.1 27105597 8 35350 36982 Phaethon lepturus 97097 AAG|GTAACCATTT...GGTTTTTTACTA/TGGTTTTTTACT...TGTAG|CTT 1 1 86.805

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);