introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 27105589

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
150886387 GT-AG 0 0.0001897199011426 4335 rna-XM_010284690.1 27105589 1 17621 21955 Phaethon lepturus 97097 AAG|GTCTGTATCT...TCTTTTTTAATT/TCTTTTTTAATT...TTCAG|ATA 1 1 14.675
150886388 GT-AG 0 1.000000099473604e-05 6009 rna-XM_010284690.1 27105589 2 22135 28143 Phaethon lepturus 97097 CTT|GTGAGTATTG...AGGTATTTGAAG/TGAAGACTAACC...TAAAG|GTT 0 1 29.03
150886389 GT-AG 0 1.000000099473604e-05 11927 rna-XM_010284690.1 27105589 3 28270 40196 Phaethon lepturus 97097 GTG|GTGAGTTGTT...GTGTTCTTATTC/TGTGTTCTTATT...TTCAG|ATA 0 1 39.134
150886390 GT-AG 0 1.000000099473604e-05 1296 rna-XM_010284690.1 27105589 4 40311 41606 Phaethon lepturus 97097 AGG|GTAAGAGTTT...TTTTCTTTCTTT/GACAGTTTGATG...GACAG|GAC 0 1 48.276
150886391 GT-AG 0 1.000000099473604e-05 47315 rna-XM_010284690.1 27105589 5 41702 89016 Phaethon lepturus 97097 CAG|GTAAATATAA...GTTATTTTAATT/GTTATTTTAATT...TCCAG|TTT 2 1 55.894
150886392 GT-AG 0 1.000000099473604e-05 23574 rna-XM_010284690.1 27105589 6 89120 112693 Phaethon lepturus 97097 TAC|GTGAGTATCA...AACCTTTTATTC/ATATATTTTACA...TAAAG|GCG 0 1 64.154
150886393 GT-AG 0 1.000000099473604e-05 9043 rna-XM_010284690.1 27105589 7 112877 121919 Phaethon lepturus 97097 CTG|GTAAGTGATA...TTCTTTTCAATT/CTTCTTTTCAAT...TCCAG|GTG 0 1 78.829
150886394 GT-AG 0 1.000000099473604e-05 30478 rna-XM_010284690.1 27105589 8 122034 152511 Phaethon lepturus 97097 AGA|GTAAGTGCTC...CTTCCCTCAGCG/CCTTCCCTCAGC...TGCAG|AAA 0 1 87.971

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);