WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 27105588

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
150886379	GT-AG	1.000000099473604e-05	3000	rna-XM_010284469.1 27105588	1	44606	47605	Phaethon lepturus 97097	AAG\|GTAAGTGTGA...TGGTTTTTAACA/TGGTTTTTAACA...TTAAG\|GAG	0	1	5.709
150886380	GT-AG	1.000000099473604e-05	1644	rna-XM_010284469.1 27105588	2	42236	43879	Phaethon lepturus 97097	CTG\|GTGTGTGAAA...TGTAACTTACAA/ATGTAACTTACA...TTTAG\|CTT	0	1	50.276
150886381	GT-AG	1.000000099473604e-05	6153	rna-XM_010284469.1 27105588	3	35965	42117	Phaethon lepturus 97097	TTG\|GTTAGTTGGA...CTTTTCTGGATT/TCTGGATTTATT...CATAG\|ATG	1	1	57.52
150886382	GT-AG	1.000000099473604e-05	2213	rna-XM_010284469.1 27105588	4	33567	35779	Phaethon lepturus 97097	AAG\|GTGGGATCTA...CACTCTTTGAAT/CATTTATTGACC...AACAG\|GTT	0	1	68.877
150886383	GT-AG	1.000000099473604e-05	3542	rna-XM_010284469.1 27105588	5	29856	33397	Phaethon lepturus 97097	TTG\|GTAAGGAAAA...ATAACTTTGATA/ATAACTTTGATA...CACAG\|AAA	1	1	79.251
150886384	GT-AG	2.220146046970212e-05	1882	rna-XM_010284469.1 27105588	6	27870	29751	Phaethon lepturus 97097	GAG\|GTATTGACAT...TGTTCCTTTTTC/CGTTGCCTAAGA...TGCAG\|GCT	0	1	85.635
150886385	GT-AG	0.0002060346370994	828	rna-XM_010284469.1 27105588	7	26970	27797	Phaethon lepturus 97097	TAT\|GTAAGTTGGC...TTCGCTTTAATT/TTCGCTTTAATT...TGCAG\|GGT	0	1	90.055
150886386	GT-AG	2.3015438267660088e-05	595	rna-XM_010284469.1 27105588	8	26240	26834	Phaethon lepturus 97097	AGG\|GTAAGCAACC...ATATTTTTATTT/TATATTTTTATT...AACAG\|AAG	0	1	98.343

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);