introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 27105577

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
150886221 GT-AG 0 1.000000099473604e-05 940 rna-XM_010282886.1 27105577 1 255 1194 Phaethon lepturus 97097 AAG|GTACGGGGCT...AAGGCTTTATTC/AAAGGCTTTATT...CGCAG|AAC 0 1 4.158
150886222 GT-AG 0 1.1089415272348156e-05 103 rna-XM_010282886.1 27105577 2 1374 1476 Phaethon lepturus 97097 GAA|GTAAGTCGTG...CATGCTTAAACA/GCATGCTTAAAC...TACAG|AGT 2 1 8.868
150886223 GT-AG 0 1.000000099473604e-05 826 rna-XM_010282886.1 27105577 3 1616 2441 Phaethon lepturus 97097 CTG|GTGAGTGTTG...GAACCCTTCTCT/CACATGTGCATC...TGCAG|GCC 0 1 12.526
150886224 GT-AG 0 1.000000099473604e-05 368 rna-XM_010282886.1 27105577 4 2636 3003 Phaethon lepturus 97097 CAG|GTAAGACAGA...TAGTCCTGAAGC/GCTGAGCTGATT...TACAG|AAC 2 1 17.632
150886225 GT-AG 0 0.0003052354176339 296 rna-XM_010282886.1 27105577 5 3155 3450 Phaethon lepturus 97097 GCG|GTAATTCTTT...TTCCCTTTGACA/TTCCCTTTGACA...GCCAG|GCG 0 1 21.605
150886226 GT-AG 0 1.000000099473604e-05 994 rna-XM_010282886.1 27105577 6 3535 4528 Phaethon lepturus 97097 AAG|GTAAGGACTG...TCTCCCTTTCCT/GACCCAGTAATC...CACAG|GAC 0 1 23.816
150886227 GT-AG 0 1.000000099473604e-05 686 rna-XM_010282886.1 27105577 7 4646 5331 Phaethon lepturus 97097 GAG|GTAAATAAGG...CTTTTCTCAGTG/CCTTTTCTCAGT...CGTAG|GAA 0 1 26.895
150886228 GT-AG 0 1.1181480026466234e-05 506 rna-XM_010282886.1 27105577 8 5425 5930 Phaethon lepturus 97097 CAG|GTAAGCGATC...GTGTTTTTGACT/GTGTTTTTGACT...AACAG|CAA 0 1 29.342

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);