introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 27105550

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
150885973 GT-AG 0 1.000000099473604e-05 1348 rna-XM_010295823.1 27105550 1 9672 11019 Phaethon lepturus 97097 CAA|GTGAGTAACA...GTGGTTTGAATT/CACTGTCTAACT...CACAG|CTG 1 1 4.125
150885974 GT-AG 0 1.000000099473604e-05 2348 rna-XM_010295823.1 27105550 2 11085 13432 Phaethon lepturus 97097 CTG|GTAAAATGAA...TTTTTCTTTGCA/CATGACTTCAAC...CCCAG|CTG 0 1 11.371
150885975 GT-AG 0 0.0020898807447096 1003 rna-XM_010295823.1 27105550 3 13553 14555 Phaethon lepturus 97097 AAG|GTATAGTTAA...CTTCCTTTATTT/TCTTCCTTTATT...TGCAG|AAA 0 1 24.749
150885976 GT-AG 0 1.000000099473604e-05 1722 rna-XM_010295823.1 27105550 4 14695 16416 Phaethon lepturus 97097 CAG|GTTTGTCGTC...CATTCCTTTCTT/TCCTTTCTTACG...GTCAG|ACT 1 1 40.245
150885977 GT-AG 0 1.000000099473604e-05 736 rna-XM_010295823.1 27105550 5 16542 17277 Phaethon lepturus 97097 TCG|GTAAGCAAAC...AGCTCCTTGCTA/CTAGAGTTGAGT...TAAAG|GGC 0 1 54.181
150885978 GT-AG 0 1.000000099473604e-05 845 rna-XM_010295823.1 27105550 6 17384 18228 Phaethon lepturus 97097 CAG|GTAAGGAGTT...TTTTTTTTAAAT/TTTTTTTTAAAT...TGCAG|AGA 1 1 65.998
150885979 GT-AG 0 1.000000099473604e-05 459 rna-XM_010295823.1 27105550 7 18308 18766 Phaethon lepturus 97097 TGG|GTAGGAAATA...TTCTCCTCAGTG/TCAGTGTTTACT...TTCAG|ACC 2 1 74.805

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);