introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 27105543

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
150885849 GT-AG 0 0.0062302919985305 1701 rna-XM_010285056.1 27105543 1 18048 19748 Phaethon lepturus 97097 CAG|GTACACTCTC...TATATTTTATTT/ATATATTTTATT...TGCAG|GTT 2 1 7.608
150885850 GT-AG 0 1.000000099473604e-05 557 rna-XM_010285056.1 27105543 2 19844 20400 Phaethon lepturus 97097 TTG|GTAAGTACCA...TTTTTCTTTTCT/CTCCTTCTAACC...CCCAG|GTT 1 1 12.362
150885851 GT-AG 0 1.000000099473604e-05 5300 rna-XM_010285056.1 27105543 3 20635 25934 Phaethon lepturus 97097 CAG|GTACTGCCCC...AAGGTTTTTTTG/GTAGCACTAAAA...AACAG|GTT 1 1 24.074
150885852 GT-AG 0 1.000000099473604e-05 697 rna-XM_010285056.1 27105543 4 26090 26786 Phaethon lepturus 97097 AAC|GTAAGTAGAA...TTTTTCTTTTTT/TTTTTTCTTTTT...TTTAG|GAG 0 1 31.832
150885853 GT-AG 0 1.000000099473604e-05 403 rna-XM_010285056.1 27105543 5 26865 27267 Phaethon lepturus 97097 CAG|GTACTGAGCT...ATGATTTCAATT/CATGATTTCAAT...TGCAG|GTT 0 1 35.736
150885854 GT-AG 0 1.3930389195390456e-05 3819 rna-XM_010285056.1 27105543 6 27421 31239 Phaethon lepturus 97097 AAG|GTAAACTAGC...GCAGTCCTGACG/CCCTGTCTCATT...TTCAG|GTC 0 1 43.393
150885855 GT-AG 0 4.416363101648258e-05 1325 rna-XM_010285056.1 27105543 7 31321 32645 Phaethon lepturus 97097 CAG|GTTGCTGTTG...CATGTTTTATAC/ACATGTTTTATA...CTAAG|GTC 0 1 47.447
150885856 GT-AG 0 1.000000099473604e-05 2146 rna-XM_010285056.1 27105543 8 32798 34943 Phaethon lepturus 97097 GGG|GTGAGTGGCA...CTGGCTTTATTT/CCTGGCTTTATT...GGCAG|GCT 2 1 55.055

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);