introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 27105539

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
150885821 GT-AG 0 1.000000099473604e-05 4209 rna-XM_010296855.1 27105539 1 17184 21392 Phaethon lepturus 97097 CAG|GTGATGCAAG...TTCTCCTTTGTC/TGAGACCTAAAA...TGCAG|GCA 2 1 5.517
150885822 GT-AG 0 1.000000099473604e-05 2886 rna-XM_010296855.1 27105539 2 14126 17011 Phaethon lepturus 97097 CTG|GTAGAGGCAG...CGGATTTTAACT/CGGATTTTAACT...CGTAG|ATG 0 1 18.881
150885823 GT-AG 0 5.2151672999741584e-05 5445 rna-XM_010296855.1 27105539 3 8492 13936 Phaethon lepturus 97097 CAG|GTAACGCCTT...ATGTTTTTAATG/ATGTTTTTAATG...TTCAG|GAG 0 1 33.566
150885824 GT-AG 0 1.000000099473604e-05 75 rna-XM_010296855.1 27105539 4 8284 8358 Phaethon lepturus 97097 CAG|GTAGGGACCG...CGAGCCTTTTTT/GGTACGCCCACG...CATAG|GTG 1 1 43.901
150885825 GT-AG 0 1.000000099473604e-05 1928 rna-XM_010296855.1 27105539 5 6258 8185 Phaethon lepturus 97097 CAG|GTAAGACCTT...CTCTCCTTGATC/ACTGTTTTCAAG...CACAG|GTG 0 1 51.515
150885826 GT-AG 0 1.000000099473604e-05 1806 rna-XM_010296855.1 27105539 6 4332 6137 Phaethon lepturus 97097 ATG|GTGAGCACTT...GGGTTGTTATTT/TGTTATTTCACT...TCTAG|CAC 0 1 60.839
150885827 GT-AG 0 1.000000099473604e-05 385 rna-XM_010296855.1 27105539 7 3870 4254 Phaethon lepturus 97097 CTG|GTGAGCGCAT...CATATCTTATTT/ATCTTATTTACT...GGAAG|GTT 2 1 66.822
150885828 GT-AG 0 1.000000099473604e-05 700 rna-XM_010296855.1 27105539 8 2991 3690 Phaethon lepturus 97097 ATG|GTAAGGACAA...GAGTCCTTATTT/GTCCTTTTCACC...TTCAG|GCT 1 1 80.73

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);