WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 26834564

descending

id ▼	dinucleotide_pair	is_minor	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
148958058	GT-AG	0	0.0001868192459182	6276	rna-XM_027359953.1 26834564	1	458865	465140	Penaeus vannamei 6689	TAT\|GTAAGCCTAA...CATGTTTTATTG/GTTTTATTGATA...TCCAG\|TAC	0	1	3.524
148958059	GT-AG	1	99.99919695422572	1520	rna-XM_027359953.1 26834564	2	465214	466733	Penaeus vannamei 6689	TCA\|GTATCCTTTT...TCTTTCTTAACT/TCTTTCTTAACT...TGCAG\|AGC	1	1	8.884
148958060	GT-AG	0	1.000000099473604e-05	1417	rna-XM_027359953.1 26834564	3	466826	468242	Penaeus vannamei 6689	AAG\|GTAAGATGAA...AGCATTTTTTTT/AAATGTTTCACA...TCTAG\|GTG	0	1	15.639
148958061	GT-AG	0	0.00015815474425	194	rna-XM_027359953.1 26834564	4	468405	468598	Penaeus vannamei 6689	CAA\|GTATGTAAAG...TTGTTTCTAATT/TTGTTTCTAATT...TTCAG\|GAA	0	1	27.533
148958062	GT-AG	0	6.3773315320216e-05	3211	rna-XM_027359953.1 26834564	5	468660	471870	Penaeus vannamei 6689	CAG\|GTAATCATGA...TGTACTTTATTA/TAATTGCTCATA...TCCAG\|GGA	1	1	32.012
148958063	GT-AG	0	1.000000099473604e-05	619	rna-XM_027359953.1 26834564	6	472011	472629	Penaeus vannamei 6689	CAG\|GTGAGTTAAT...AGGTATTTATCT/TAGGTATTTATC...TCAAG\|GTG	0	1	42.291
148958064	GT-AG	0	1.000000099473604e-05	1149	rna-XM_027359953.1 26834564	7	472829	473977	Penaeus vannamei 6689	AGG\|GTAAGTATTT...CATTTTGTAATT/CATTTTGTAATT...CATAG\|ATT	1	1	56.902

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);