WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 26834502

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
148957796	GT-AG	1.000000099473604e-05	1797	rna-XM_027353672.1 26834502	2	403817	405613	Penaeus vannamei 6689	TTG\|GTAAGTCCAG...TATATCTTACTC/ATATATCTTACT...CGCAG\|GGA	1	1	28.867
148957797	GT-AG	1.000000099473604e-05	16044	rna-XM_027353672.1 26834502	3	387517	403560	Penaeus vannamei 6689	CAG\|GTGCGGCCCC...TCCACTTTATTA/CATGAACTTACA...CGCAG\|GTG	2	1	45.933
148957798	GT-AG	0.0199807536776276	227	rna-XM_027353672.1 26834502	4	387169	387395	Penaeus vannamei 6689	GAG\|GTATATTTTG...CGCGCCCTACCC/AAACGACAAATC...CCCAG\|GCC	0	1	54.0
148957799	GT-AG	1.000000099473604e-05	189	rna-XM_027353672.1 26834502	5	386824	387012	Penaeus vannamei 6689	AAG\|GTGAGGGCGG...TACTCTATATCT/ATCTTCCTCATA...CAAAG\|GCG	0	1	64.4
148957800	GT-AG	1.000000099473604e-05	134	rna-XM_027353672.1 26834502	6	386616	386749	Penaeus vannamei 6689	GCA\|GTGAGTTGAT...AGTGTCTTGACT/AGTGTCTTGACT...TTAAG\|GCG	2	1	69.333
148957801	GT-AG	0.0011222326426229	335	rna-XM_027353672.1 26834502	7	386160	386494	Penaeus vannamei 6689	CAG\|GTAACGTGTT...ATGTCTTTGAAG/AGGCTTTTGAAT...CTCAG\|ATA	0	1	77.4
148957802	GT-AG	1.000000099473604e-05	335	rna-XM_027353672.1 26834502	8	385678	386012	Penaeus vannamei 6689	AAT\|GTGAGTGAGA...GCCCCCTTCCTC/CTTCCGCTGACT...CGCAG\|ATC	0	1	87.2
148957866	GT-AG	1.000000099473604e-05	368	rna-XM_027353672.1 26834502	1	405718	406085	Penaeus vannamei 6689	CAG\|GTGTGTGGCC...GAAGCTTTAGCA/ACAAAATTCATT...GACAG\|AAT		0	22.6

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);