WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 26741179

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
148388623	GT-AG	0.0017003351632954	88	rna-gnl\|WGS:JAHLWZ\|Pelo_141_1 26741179	1	315739	315826	Pelomyxa schiedti 1580589	TAG\|GTTCCTTCTT...CTAACCGTGAAA/AGTTTACTAACC...AAAAG\|GCA	2	1	12.442
148388624	GT-AG	0.0008306452252481	49	rna-gnl\|WGS:JAHLWZ\|Pelo_141_1 26741179	2	315521	315569	Pelomyxa schiedti 1580589	CCT\|GTGTGCTCTC...ACTCCCAAAATA/AAAATACTCATT...CTTAG\|TAT	0	1	22.222
148388625	GT-AG	0.0411255344514599	49	rna-gnl\|WGS:JAHLWZ\|Pelo_141_1 26741179	3	314828	314876	Pelomyxa schiedti 1580589	AAG\|GTATTCTAGG...TTTGCTTTCACA/TTTGCTTTCACA...CACAG\|ACT	2	1	59.491
148388626	GT-AG	1.000000099473604e-05	106	rna-gnl\|WGS:JAHLWZ\|Pelo_141_1 26741179	4	314517	314622	Pelomyxa schiedti 1580589	ATG\|GTTTGTACCT...CCATTCATAACC/TCTCCATTCATA...ACTAG\|GAG	0	1	71.354
148388627	GT-AG	0.0002463410820154	45	rna-gnl\|WGS:JAHLWZ\|Pelo_141_1 26741179	5	314288	314332	Pelomyxa schiedti 1580589	GTG\|GTACGCCGGC...CCCGTTTTAATC/CCCGTTTTAATC...TGTAG\|GGT	1	1	82.002
148388628	GT-AG	0.0545332888180945	51	rna-gnl\|WGS:JAHLWZ\|Pelo_141_1 26741179	6	314106	314156	Pelomyxa schiedti 1580589	TTT\|GTATGTCCTA...CTATTCTTACTC/CCTATTCTTACT...CAAAG\|GTG	0	1	89.583
148388629	GT-AG	0.0004953176865852	57	rna-gnl\|WGS:JAHLWZ\|Pelo_141_1 26741179	7	313920	313976	Pelomyxa schiedti 1580589	GAA\|GTATGAACCA...AGTTTCTTACTC/AAGTTTCTTACT...TCCAG\|ACC	0	1	97.049

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);