introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 26701917

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
148095454 GT-AG 0 1.000000099473604e-05 2350 rna-XM_009484847.1 26701917 1 12713 15062 Pelecanus crispus 36300 CAG|GTAAGCATTT...TATATATTAATA/GTCATTCTAATT...TGTAG|GCT 0 1 8.313
148095455 GT-AG 0 1.000000099473604e-05 1793 rna-XM_009484847.1 26701917 2 10808 12600 Pelecanus crispus 36300 AAG|GTATGAGTAA...ATAGTATTAAAA/ATAGTATTAAAA...CTCAG|GTG 1 1 17.441
148095456 GT-AG 0 0.0001062960194534 1103 rna-XM_009484847.1 26701917 3 9552 10654 Pelecanus crispus 36300 AAG|GTGTGCTACT...TTGTTTATAATT/TTGTTTATAATT...CCTAG|ATA 1 1 29.91
148095457 GT-AG 0 0.0004711476619208 1070 rna-XM_009484847.1 26701917 4 8390 9459 Pelecanus crispus 36300 ATA|GTATGTGTCT...CAACCATTGTTT/GCAGTGCTAACA...TACAG|GTC 0 1 37.408
148095458 GT-AG 0 1.000000099473604e-05 696 rna-XM_009484847.1 26701917 5 7511 8206 Pelecanus crispus 36300 GAG|GTAAAGTTGT...CTAGCATTAATC/CTAGCATTAATC...GACAG|CGT 0 1 52.323
148095459 GT-AG 0 0.0169096245893043 167 rna-XM_009484847.1 26701917 6 7197 7363 Pelecanus crispus 36300 GTG|GTATGTTCTA...TTTTCTTTTTCT/GATAAATTAACT...ACTAG|ATT 0 1 64.303
148095460 GT-AG 0 1.000000099473604e-05 243 rna-XM_009484847.1 26701917 7 6849 7091 Pelecanus crispus 36300 GAG|GTGAAGAACA...CTTGGTTTATTT/TCTTGGTTTATT...TTCAG|ATG 0 1 72.861
148095461 GT-AG 0 1.000000099473604e-05 715 rna-XM_009484847.1 26701917 9 5994 6708 Pelecanus crispus 36300 ATG|GTAAGTTCAT...ATTATTTTTATT/ATTATTTTTATT...TTCAG|ATA 1 1 84.189

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);