introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 26701871

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
148095087 GT-AG 0 1.000000099473604e-05 1255 rna-XM_009479086.1 26701871 1 17905 19159 Pelecanus crispus 36300 AAG|GTTAGTGAAT...GGCTTTTTCTCT/CTATTGCTGAGT...TTCAG|AAG 0 1 12.5
148095088 GT-AG 0 1.000000099473604e-05 967 rna-XM_009479086.1 26701871 2 16799 17765 Pelecanus crispus 36300 AAG|GTAAAACTGT...ACTCCTGTAACA/TGCTTTCTCACT...TCTAG|TGG 1 1 28.588
148095089 GT-AG 0 1.000000099473604e-05 5696 rna-XM_009479086.1 26701871 4 10993 16688 Pelecanus crispus 36300 AAT|GTAAGTGTCC...CATGTTTGAGTT/GAATGATTCATG...TTTAG|TGT 1 1 41.088
148095090 GT-AG 0 1.000000099473604e-05 5570 rna-XM_009479086.1 26701871 5 5265 10834 Pelecanus crispus 36300 AAG|GTAAGATCAT...TAATTCTCACTG/TTAATTCTCACT...TACAG|GAG 0 1 59.375
148095091 GT-AG 0 1.000000099473604e-05 1438 rna-XM_009479086.1 26701871 6 3734 5171 Pelecanus crispus 36300 GAG|GTACAAATTC...TTTTTCTTATGC/TTTTTTCTTATG...TCTAG|GAG 0 1 70.139
148095092 GT-AG 0 1.000000099473604e-05 964 rna-XM_009479086.1 26701871 7 2683 3646 Pelecanus crispus 36300 CAG|GTATTGACAC...TAATAATTAAAC/TGACTACTAATA...TGCAG|TCA 0 1 80.208
148095093 GT-AG 0 2.985468416718743e-05 575 rna-XM_009479086.1 26701871 8 2015 2589 Pelecanus crispus 36300 AAG|GTAGATATTT...TTTTCTTTGTCT/TTTGTTCTGATT...GGTAG|CCC 0 1 90.972

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);