introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 26701865

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
148095002 GT-AG 0 1.000000099473604e-05 6654 rna-XM_009478206.1 26701865 1 31961 38614 Pelecanus crispus 36300 AAG|GTGGGATAAT...TTTTTCTCAATG/TTTTTTCTCAAT...TACAG|ATG 0 1 6.388
148095003 GT-AG 0 1.000000099473604e-05 1893 rna-XM_009478206.1 26701865 2 30013 31905 Pelecanus crispus 36300 AGG|GTGAGTTAGC...CCTGCTTTTATT/AACTAATTCATT...AACAG|TTC 1 1 9.582
148095004 GT-AG 0 1.000000099473604e-05 15880 rna-XM_009478206.1 26701865 3 14102 29981 Pelecanus crispus 36300 CAG|GTAAGAACTC...CTTTCTCTATCA/TTTCCCCTCACT...TACAG|TGC 2 1 11.382
148095005 GT-AG 0 0.3982354125200195 4336 rna-XM_009478206.1 26701865 4 9575 13910 Pelecanus crispus 36300 CAG|GTAGCCTTGC...TTATTCTTACAA/GTTATTCTTACA...TGCAG|AGG 1 1 22.474
148095006 GT-AG 0 1.000000099473604e-05 2756 rna-XM_009478206.1 26701865 5 6021 8776 Pelecanus crispus 36300 AAC|GTAAGGAAGT...AAATCCTTATCT/CCTTATCTGATT...TGCAG|ATT 1 1 68.815
148095007 GT-AG 0 1.000000099473604e-05 1532 rna-XM_009478206.1 26701865 6 4354 5885 Pelecanus crispus 36300 AAA|GTGAGTATCA...TTTTTCTTATTC/TTTTTTCTTATT...TTTAG|TTC 1 1 76.655
148095008 GT-AG 0 1.000000099473604e-05 1527 rna-XM_009478206.1 26701865 7 2736 4262 Pelecanus crispus 36300 AAG|GTAGTTCAGA...CTTTTCTTCACC/CTTTTCTTCACC...AACAG|CCT 2 1 81.94
148095009 GT-AG 0 1.000000099473604e-05 1403 rna-XM_009478206.1 26701865 8 1228 2630 Pelecanus crispus 36300 CAG|GTAGGAACCC...ATATTCTTGTCT/GTCTTTCTCACT...TGCAG|GAC 2 1 88.037

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);