introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
10 rows where transcript_id = 26266786
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
145335931 | GT-AG | 0 | 5.71469395087171e-05 | 34 | rna-gnl|WGS:JTDE|EG68_00111 26266786 | 1 | 86987 | 87020 | Paragonimus skrjabini miyazakii 59628 | GCT|GTACGTAGTT...ACGTCATTTTTC/GTGAACGTCATT...TTTAG|TTT | 0 | 1 | 7.597 |
145335932 | GT-AG | 0 | 0.0033995967429421 | 53 | rna-gnl|WGS:JTDE|EG68_00111 26266786 | 2 | 87252 | 87304 | Paragonimus skrjabini miyazakii 59628 | GGA|GTATGTTGAC...CTTTTTTTTGCG/CGTGTATTCAAT...TATAG|GTA | 0 | 1 | 21.201 |
145335933 | GT-AG | 0 | 4.161854214741284e-05 | 8701 | rna-gnl|WGS:JTDE|EG68_00111 26266786 | 3 | 87602 | 96302 | Paragonimus skrjabini miyazakii 59628 | AAG|GTACTTCATT...TGCCTTTTATTT/ATACTTTTCATT...TGTAG|CGA | 0 | 1 | 38.693 |
145335934 | GT-AG | 0 | 1.000000099473604e-05 | 6328 | rna-gnl|WGS:JTDE|EG68_00111 26266786 | 4 | 96348 | 102675 | Paragonimus skrjabini miyazakii 59628 | GAG|GTTAGTGAAA...CTCACCTTGAAT/TGTTTTTTCACT...TTTAG|TCT | 0 | 1 | 41.343 |
145335935 | GT-AG | 0 | 0.0012437500449485 | 6105 | rna-gnl|WGS:JTDE|EG68_00111 26266786 | 5 | 102896 | 109000 | Paragonimus skrjabini miyazakii 59628 | AAA|GTAAATTGTT...GTTGCTTTATCT/CGAAAATTCACT...CCAAG|TTC | 1 | 1 | 54.299 |
145335936 | GT-AG | 0 | 1.000000099473604e-05 | 6136 | rna-gnl|WGS:JTDE|EG68_00111 26266786 | 6 | 109068 | 115203 | Paragonimus skrjabini miyazakii 59628 | CAA|GTGAGTTTAC...AGTTTCTGAATC/CGTCATCTCACT...TTCAG|TGC | 2 | 1 | 58.245 |
145335937 | GT-AG | 0 | 0.0003447826401706 | 1315 | rna-gnl|WGS:JTDE|EG68_00111 26266786 | 7 | 115267 | 116581 | Paragonimus skrjabini miyazakii 59628 | GAA|GTAAGCACTT...TAAGTCTTGATA/TAAGTCTTGATA...AACAG|GAT | 2 | 1 | 61.955 |
145335938 | GT-AG | 0 | 1.000000099473604e-05 | 2470 | rna-gnl|WGS:JTDE|EG68_00111 26266786 | 8 | 116752 | 119221 | Paragonimus skrjabini miyazakii 59628 | ATG|GTTAGTTTTG...TTCTCGTTATTC/GTTATTCTTACG...TGCAG|GTG | 1 | 1 | 71.967 |
145335939 | GT-AG | 0 | 0.0016220730308647 | 89 | rna-gnl|WGS:JTDE|EG68_00111 26266786 | 9 | 119305 | 119393 | Paragonimus skrjabini miyazakii 59628 | CAA|GTATGTGTTT...ATATCCATGATG/ATGATGATCATT...TACAG|GGT | 0 | 1 | 76.855 |
145335940 | GT-AG | 0 | 1.000000099473604e-05 | 1555 | rna-gnl|WGS:JTDE|EG68_00111 26266786 | 10 | 119624 | 121178 | Paragonimus skrjabini miyazakii 59628 | AAG|GTTAGTTTTC...ACTATTTTAATC/ACTATTTTAATC...CACAG|CCT | 2 | 1 | 90.4 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);