introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
7 rows where transcript_id = 26266757
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
145335712 | GT-AG | 0 | 3.698421537946497e-05 | 27441 | rna-gnl|WGS:JTDE|EG68_00046 26266757 | 1 | 92192 | 119632 | Paragonimus skrjabini miyazakii 59628 | CGA|GTAAGTTGTA...TCATCTTTCTCT/TATTCATTCATC...TACAG|CTC | 1 | 1 | 14.529 |
145335713 | GT-AG | 0 | 1.000000099473604e-05 | 5760 | rna-gnl|WGS:JTDE|EG68_00046 26266757 | 2 | 86350 | 92109 | Paragonimus skrjabini miyazakii 59628 | CGG|GTACGTGCCT...TAATCCATGGCT/CCATGGCTCACT...TATAG|TTG | 2 | 1 | 17.775 |
145335714 | GT-AG | 0 | 1.0673324886243684e-05 | 8701 | rna-gnl|WGS:JTDE|EG68_00046 26266757 | 3 | 77630 | 86330 | Paragonimus skrjabini miyazakii 59628 | AAG|GTAAGTTGTG...TAACTCTTATAT/TATATTCTCATA...TACAG|CGT | 0 | 1 | 18.527 |
145335715 | GT-AG | 0 | 1.000000099473604e-05 | 21317 | rna-gnl|WGS:JTDE|EG68_00046 26266757 | 4 | 56156 | 77472 | Paragonimus skrjabini miyazakii 59628 | ATG|GTGAGTTCGG...TGTTTTTTGATT/TGTTTTTTGATT...TCTAG|CCG | 1 | 1 | 24.743 |
145335716 | GT-AG | 0 | 0.0016476602414057 | 4911 | rna-gnl|WGS:JTDE|EG68_00046 26266757 | 5 | 50180 | 55090 | Paragonimus skrjabini miyazakii 59628 | ACG|GTAATCTTGC...AGACTTTTATTG/AAGACTTTTATT...TTTAG|CTA | 1 | 1 | 66.904 |
145335717 | GT-AG | 0 | 1.000000099473604e-05 | 902 | rna-gnl|WGS:JTDE|EG68_00046 26266757 | 6 | 48879 | 49780 | Paragonimus skrjabini miyazakii 59628 | ATG|GTGAGCTGAT...ATCACATTATTC/CAGAATATCACA...TACAG|AAT | 1 | 1 | 82.7 |
145335718 | GT-AG | 0 | 1.000000099473604e-05 | 3045 | rna-gnl|WGS:JTDE|EG68_00046 26266757 | 7 | 45675 | 48719 | Paragonimus skrjabini miyazakii 59628 | AAG|GTGAGTTTTA...CCCTCTCTGATA/CCCTCTCTGATA...TCCAG|TAC | 1 | 1 | 88.994 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);