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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

13 rows where transcript_id = 26266737

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Suggested facets: score, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
145335609 GT-AG 0 1.000000099473604e-05 36 rna-gnl|WGS:JTDE|EG68_00032 26266737 1 8091 8126 Paragonimus skrjabini miyazakii 59628 ATG|GTAAGTGACT...TTCGGCTTAAAG/ATTCGGCTTAAA...TTCAG|GTG 0 1 0.129
145335610 GT-AG 0 1.000000099473604e-05 1561 rna-gnl|WGS:JTDE|EG68_00032 26266737 2 8187 9747 Paragonimus skrjabini miyazakii 59628 TCG|GTGAGTTGAT...TTATGTTTAACT/TTATGTTTAACT...TTCAG|ATT 0 1 2.717
145335611 GT-AG 0 1.000000099473604e-05 50 rna-gnl|WGS:JTDE|EG68_00032 26266737 3 9847 9896 Paragonimus skrjabini miyazakii 59628 AAA|GTGAGTGTGG...TTCGTTTTATAA/TTTCGTTTTATA...GCAAG|GAT   0 6.986
145335612 GT-AG 0 1.000000099473604e-05 47 rna-gnl|WGS:JTDE|EG68_00032 26266737 4 9945 9991 Paragonimus skrjabini miyazakii 59628 AAG|GTAGTTATTA...ATGAATTTAATT/ATGAATTTAATT...TTTAG|CTC   0 9.056
145335613 GT-AG 0 1.000000099473604e-05 15244 rna-gnl|WGS:JTDE|EG68_00032 26266737 5 10062 25305 Paragonimus skrjabini miyazakii 59628 AAT|GTGAGTTTGG...GTTTTCTAAACT/TGTTTTCTAAAC...TTCAG|TGC   0 12.074
145335614 GT-AG 0 0.0001007394932567 4141 rna-gnl|WGS:JTDE|EG68_00032 26266737 6 25583 29723 Paragonimus skrjabini miyazakii 59628 ATG|GTATGTATAC...CATTTGTTGAGT/CATTTGTTGAGT...AACAG|GCT   0 24.019
145335615 GT-AG 0 1.000000099473604e-05 648 rna-gnl|WGS:JTDE|EG68_00032 26266737 7 30176 30823 Paragonimus skrjabini miyazakii 59628 TGT|GTGAGTCCAG...ATGTATCTAATT/ATGTATCTAATT...GGCAG|TGA   0 43.51
145335616 GT-AG 0 2.011851851302662e-05 4312 rna-gnl|WGS:JTDE|EG68_00032 26266737 8 31039 35350 Paragonimus skrjabini miyazakii 59628 TGG|GTAGGTTGAA...ATGTTTTTATTG/TATGTTTTTATT...TTCAG|GTA   0 52.781
145335617 GT-AG 0 0.0002279387091654 947 rna-gnl|WGS:JTDE|EG68_00032 26266737 9 35500 36446 Paragonimus skrjabini miyazakii 59628 GAG|GTTTGTTTTT...GTCTTCTTTTCA/CTTCTTTTCATA...TTTAG|TTG   0 59.207
145335618 GT-AG 0 1.000000099473604e-05 1548 rna-gnl|WGS:JTDE|EG68_00032 26266737 10 36613 38160 Paragonimus skrjabini miyazakii 59628 AGG|GTAAGCCCGC...CACTGTTTAATA/CACTGTTTAATA...TGCAG|GTA   0 66.365
145335619 GT-AG 0 0.0013382025384718 2199 rna-gnl|WGS:JTDE|EG68_00032 26266737 11 38236 40434 Paragonimus skrjabini miyazakii 59628 AAG|GTATGCTCCT...GGAGCTTGATTC/GCTTGATTCATG...TGCAG|GTT   0 69.599
145335620 GT-AG 0 1.000000099473604e-05 7604 rna-gnl|WGS:JTDE|EG68_00032 26266737 12 40608 48211 Paragonimus skrjabini miyazakii 59628 CGA|GTGAGTGATT...ATTCCCCTACCA/ACATTTGTCATT...TGTAG|GAC   0 77.059
145335621 GT-AG 0 1.000000099473604e-05 1849 rna-gnl|WGS:JTDE|EG68_00032 26266737 13 48344 50192 Paragonimus skrjabini miyazakii 59628 CTG|GTAAGTAGAT...CTCTCTCTAATT/TGAATTCTAATT...ATTAG|GTG   0 82.751

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 27.512ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)