introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
13 rows where transcript_id = 26266737
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Suggested facets: score, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
145335609 | GT-AG | 0 | 1.000000099473604e-05 | 36 | rna-gnl|WGS:JTDE|EG68_00032 26266737 | 1 | 8091 | 8126 | Paragonimus skrjabini miyazakii 59628 | ATG|GTAAGTGACT...TTCGGCTTAAAG/ATTCGGCTTAAA...TTCAG|GTG | 0 | 1 | 0.129 |
145335610 | GT-AG | 0 | 1.000000099473604e-05 | 1561 | rna-gnl|WGS:JTDE|EG68_00032 26266737 | 2 | 8187 | 9747 | Paragonimus skrjabini miyazakii 59628 | TCG|GTGAGTTGAT...TTATGTTTAACT/TTATGTTTAACT...TTCAG|ATT | 0 | 1 | 2.717 |
145335611 | GT-AG | 0 | 1.000000099473604e-05 | 50 | rna-gnl|WGS:JTDE|EG68_00032 26266737 | 3 | 9847 | 9896 | Paragonimus skrjabini miyazakii 59628 | AAA|GTGAGTGTGG...TTCGTTTTATAA/TTTCGTTTTATA...GCAAG|GAT | 0 | 6.986 | |
145335612 | GT-AG | 0 | 1.000000099473604e-05 | 47 | rna-gnl|WGS:JTDE|EG68_00032 26266737 | 4 | 9945 | 9991 | Paragonimus skrjabini miyazakii 59628 | AAG|GTAGTTATTA...ATGAATTTAATT/ATGAATTTAATT...TTTAG|CTC | 0 | 9.056 | |
145335613 | GT-AG | 0 | 1.000000099473604e-05 | 15244 | rna-gnl|WGS:JTDE|EG68_00032 26266737 | 5 | 10062 | 25305 | Paragonimus skrjabini miyazakii 59628 | AAT|GTGAGTTTGG...GTTTTCTAAACT/TGTTTTCTAAAC...TTCAG|TGC | 0 | 12.074 | |
145335614 | GT-AG | 0 | 0.0001007394932567 | 4141 | rna-gnl|WGS:JTDE|EG68_00032 26266737 | 6 | 25583 | 29723 | Paragonimus skrjabini miyazakii 59628 | ATG|GTATGTATAC...CATTTGTTGAGT/CATTTGTTGAGT...AACAG|GCT | 0 | 24.019 | |
145335615 | GT-AG | 0 | 1.000000099473604e-05 | 648 | rna-gnl|WGS:JTDE|EG68_00032 26266737 | 7 | 30176 | 30823 | Paragonimus skrjabini miyazakii 59628 | TGT|GTGAGTCCAG...ATGTATCTAATT/ATGTATCTAATT...GGCAG|TGA | 0 | 43.51 | |
145335616 | GT-AG | 0 | 2.011851851302662e-05 | 4312 | rna-gnl|WGS:JTDE|EG68_00032 26266737 | 8 | 31039 | 35350 | Paragonimus skrjabini miyazakii 59628 | TGG|GTAGGTTGAA...ATGTTTTTATTG/TATGTTTTTATT...TTCAG|GTA | 0 | 52.781 | |
145335617 | GT-AG | 0 | 0.0002279387091654 | 947 | rna-gnl|WGS:JTDE|EG68_00032 26266737 | 9 | 35500 | 36446 | Paragonimus skrjabini miyazakii 59628 | GAG|GTTTGTTTTT...GTCTTCTTTTCA/CTTCTTTTCATA...TTTAG|TTG | 0 | 59.207 | |
145335618 | GT-AG | 0 | 1.000000099473604e-05 | 1548 | rna-gnl|WGS:JTDE|EG68_00032 26266737 | 10 | 36613 | 38160 | Paragonimus skrjabini miyazakii 59628 | AGG|GTAAGCCCGC...CACTGTTTAATA/CACTGTTTAATA...TGCAG|GTA | 0 | 66.365 | |
145335619 | GT-AG | 0 | 0.0013382025384718 | 2199 | rna-gnl|WGS:JTDE|EG68_00032 26266737 | 11 | 38236 | 40434 | Paragonimus skrjabini miyazakii 59628 | AAG|GTATGCTCCT...GGAGCTTGATTC/GCTTGATTCATG...TGCAG|GTT | 0 | 69.599 | |
145335620 | GT-AG | 0 | 1.000000099473604e-05 | 7604 | rna-gnl|WGS:JTDE|EG68_00032 26266737 | 12 | 40608 | 48211 | Paragonimus skrjabini miyazakii 59628 | CGA|GTGAGTGATT...ATTCCCCTACCA/ACATTTGTCATT...TGTAG|GAC | 0 | 77.059 | |
145335621 | GT-AG | 0 | 1.000000099473604e-05 | 1849 | rna-gnl|WGS:JTDE|EG68_00032 26266737 | 13 | 48344 | 50192 | Paragonimus skrjabini miyazakii 59628 | CTG|GTAAGTAGAT...CTCTCTCTAATT/TGAATTCTAATT...ATTAG|GTG | 0 | 82.751 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);