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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

12 rows where transcript_id = 26266736

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
145335597 GT-AG 0 1.000000099473604e-05 15257 rna-gnl|WGS:JTDE|EG68_00033 26266736 1 185466 200722 Paragonimus skrjabini miyazakii 59628 GAG|GTACGTCAAT...AGTGTCTTGTTT/TTTCTGTTCACT...TCCAG|TGC 2 1 0.156
145335598 GT-AG 0 0.0018982423483538 129 rna-gnl|WGS:JTDE|EG68_00033 26266736 2 200767 200895 Paragonimus skrjabini miyazakii 59628 TGT|GTACGTTAGT...GTGCACTTGAAA/TGACTTTTCATC...ACCAG|CGA 1 1 1.532
145335599 GT-AG 0 1.000000099473604e-05 30928 rna-gnl|WGS:JTDE|EG68_00033 26266736 3 200980 231907 Paragonimus skrjabini miyazakii 59628 CTG|GTAAGTTCCA...TTTTTTGTGATT/TTGTGATTCATT...CTCAG|ATC 1 1 4.159
145335600 GT-AG 0 1.000000099473604e-05 24795 rna-gnl|WGS:JTDE|EG68_00033 26266736 4 232020 256814 Paragonimus skrjabini miyazakii 59628 TAA|GTGAGTATTC...GTTATTTTATAA/TATTTTATAATT...TCCAG|TTT 2 1 7.661
145335601 GT-AG 0 1.000000099473604e-05 17817 rna-gnl|WGS:JTDE|EG68_00033 26266736 5 256966 274782 Paragonimus skrjabini miyazakii 59628 CAG|GTGGGCATCC...ATTGTTTTATCT/CTATTCCTCATT...TGTAG|AAC 0 1 12.383
145335602 GT-AG 0 1.000000099473604e-05 4890 rna-gnl|WGS:JTDE|EG68_00033 26266736 6 274870 279759 Paragonimus skrjabini miyazakii 59628 AAG|GTGAGGTTGT...TTGTGTTTAACT/TTGTGTTTAACT...TTCAG|CTG 0 1 15.103
145335603 GT-AG 0 1.000000099473604e-05 18122 rna-gnl|WGS:JTDE|EG68_00033 26266736 7 279908 298029 Paragonimus skrjabini miyazakii 59628 ACG|GTAAGTCCCT...TATTTCTTCTCT/CGAAATATCATC...TGCAG|ACG 1 1 19.731
145335604 GT-AG 0 0.0003501660157786 2778 rna-gnl|WGS:JTDE|EG68_00033 26266736 8 298345 301122 Paragonimus skrjabini miyazakii 59628 AAG|GTTTGCATTA...CTCTTTTTACTG/TCTCTTTTTACT...TGCAG|TTC 1 1 29.581
145335605 GT-AG 0 1.5303073918438613e-05 9172 rna-gnl|WGS:JTDE|EG68_00033 26266736 9 301393 310564 Paragonimus skrjabini miyazakii 59628 CAG|GTAAGCAACG...AGTCTCTTGATC/TCCGTTCTCATT...CTCAG|TTC 1 1 38.024
145335606 GT-AG 0 0.00218850529154 1528 rna-gnl|WGS:JTDE|EG68_00033 26266736 10 310769 312296 Paragonimus skrjabini miyazakii 59628 TCG|GTATGTGTTC...TTGTCCTTCGTT/TATTCTGTCATC...TTTAG|CAC 1 1 44.403
145335607 GT-AG 0 1.000000099473604e-05 11537 rna-gnl|WGS:JTDE|EG68_00033 26266736 11 312939 324475 Paragonimus skrjabini miyazakii 59628 ACG|GTGAGTGTTC...TATACCATATTT/CCAAGGATTACC...TTCAG|ATG 1 1 64.478
145335608 GT-AG 0 0.0017773946327783 2739 rna-gnl|WGS:JTDE|EG68_00033 26266736 12 324935 327673 Paragonimus skrjabini miyazakii 59628 GTG|GTATGTCTTA...GGTGCCTTTGTT/TATAGTTTCATT...TCAAG|CGG 1 1 78.831

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 37.454ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)