introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
12 rows where transcript_id = 26266736
This data as json, CSV (advanced)
Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
145335597 | GT-AG | 0 | 1.000000099473604e-05 | 15257 | rna-gnl|WGS:JTDE|EG68_00033 26266736 | 1 | 185466 | 200722 | Paragonimus skrjabini miyazakii 59628 | GAG|GTACGTCAAT...AGTGTCTTGTTT/TTTCTGTTCACT...TCCAG|TGC | 2 | 1 | 0.156 |
145335598 | GT-AG | 0 | 0.0018982423483538 | 129 | rna-gnl|WGS:JTDE|EG68_00033 26266736 | 2 | 200767 | 200895 | Paragonimus skrjabini miyazakii 59628 | TGT|GTACGTTAGT...GTGCACTTGAAA/TGACTTTTCATC...ACCAG|CGA | 1 | 1 | 1.532 |
145335599 | GT-AG | 0 | 1.000000099473604e-05 | 30928 | rna-gnl|WGS:JTDE|EG68_00033 26266736 | 3 | 200980 | 231907 | Paragonimus skrjabini miyazakii 59628 | CTG|GTAAGTTCCA...TTTTTTGTGATT/TTGTGATTCATT...CTCAG|ATC | 1 | 1 | 4.159 |
145335600 | GT-AG | 0 | 1.000000099473604e-05 | 24795 | rna-gnl|WGS:JTDE|EG68_00033 26266736 | 4 | 232020 | 256814 | Paragonimus skrjabini miyazakii 59628 | TAA|GTGAGTATTC...GTTATTTTATAA/TATTTTATAATT...TCCAG|TTT | 2 | 1 | 7.661 |
145335601 | GT-AG | 0 | 1.000000099473604e-05 | 17817 | rna-gnl|WGS:JTDE|EG68_00033 26266736 | 5 | 256966 | 274782 | Paragonimus skrjabini miyazakii 59628 | CAG|GTGGGCATCC...ATTGTTTTATCT/CTATTCCTCATT...TGTAG|AAC | 0 | 1 | 12.383 |
145335602 | GT-AG | 0 | 1.000000099473604e-05 | 4890 | rna-gnl|WGS:JTDE|EG68_00033 26266736 | 6 | 274870 | 279759 | Paragonimus skrjabini miyazakii 59628 | AAG|GTGAGGTTGT...TTGTGTTTAACT/TTGTGTTTAACT...TTCAG|CTG | 0 | 1 | 15.103 |
145335603 | GT-AG | 0 | 1.000000099473604e-05 | 18122 | rna-gnl|WGS:JTDE|EG68_00033 26266736 | 7 | 279908 | 298029 | Paragonimus skrjabini miyazakii 59628 | ACG|GTAAGTCCCT...TATTTCTTCTCT/CGAAATATCATC...TGCAG|ACG | 1 | 1 | 19.731 |
145335604 | GT-AG | 0 | 0.0003501660157786 | 2778 | rna-gnl|WGS:JTDE|EG68_00033 26266736 | 8 | 298345 | 301122 | Paragonimus skrjabini miyazakii 59628 | AAG|GTTTGCATTA...CTCTTTTTACTG/TCTCTTTTTACT...TGCAG|TTC | 1 | 1 | 29.581 |
145335605 | GT-AG | 0 | 1.5303073918438613e-05 | 9172 | rna-gnl|WGS:JTDE|EG68_00033 26266736 | 9 | 301393 | 310564 | Paragonimus skrjabini miyazakii 59628 | CAG|GTAAGCAACG...AGTCTCTTGATC/TCCGTTCTCATT...CTCAG|TTC | 1 | 1 | 38.024 |
145335606 | GT-AG | 0 | 0.00218850529154 | 1528 | rna-gnl|WGS:JTDE|EG68_00033 26266736 | 10 | 310769 | 312296 | Paragonimus skrjabini miyazakii 59628 | TCG|GTATGTGTTC...TTGTCCTTCGTT/TATTCTGTCATC...TTTAG|CAC | 1 | 1 | 44.403 |
145335607 | GT-AG | 0 | 1.000000099473604e-05 | 11537 | rna-gnl|WGS:JTDE|EG68_00033 26266736 | 11 | 312939 | 324475 | Paragonimus skrjabini miyazakii 59628 | ACG|GTGAGTGTTC...TATACCATATTT/CCAAGGATTACC...TTCAG|ATG | 1 | 1 | 64.478 |
145335608 | GT-AG | 0 | 0.0017773946327783 | 2739 | rna-gnl|WGS:JTDE|EG68_00033 26266736 | 12 | 324935 | 327673 | Paragonimus skrjabini miyazakii 59628 | GTG|GTATGTCTTA...GGTGCCTTTGTT/TATAGTTTCATT...TCAAG|CGG | 1 | 1 | 78.831 |
Advanced export
JSON shape: default, array, newline-delimited, object
CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);