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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 26266716

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Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
145335471 GT-AG 0 1.885695344629852e-05 753 rna-gnl|WGS:JTDE|EG68_00029 26266716 2 195098 195850 Paragonimus skrjabini miyazakii 59628 ATG|GTAGGTTTAT...CCACTATTGATC/CCACTATTGATC...CACAG|AAC 0 1 25.0
145335472 GT-AG 0 1.000000099473604e-05 5854 rna-gnl|WGS:JTDE|EG68_00029 26266716 3 196226 202079 Paragonimus skrjabini miyazakii 59628 GCT|GTGAGTCCTG...CAGTTCTTATTT/ACAGTTCTTATT...TATAG|GAA 0 1 40.836
145335473 GT-AG 0 1.000000099473604e-05 10471 rna-gnl|WGS:JTDE|EG68_00029 26266716 4 202260 212730 Paragonimus skrjabini miyazakii 59628 AAG|GTCAGTAAGT...CGTTTGTTGATT/CGTTTGTTGATT...CGTAG|AAG 0 1 48.438
145335474 GT-AG 0 1.000000099473604e-05 874 rna-gnl|WGS:JTDE|EG68_00029 26266716 5 212896 213769 Paragonimus skrjabini miyazakii 59628 AAG|GTTAGTAGAA...CTCCCCGAAATC/CCTATTCCCACA...CACAG|ACG 0 1 55.405
145335475 GT-AG 0 1.000000099473604e-05 8489 rna-gnl|WGS:JTDE|EG68_00029 26266716 6 214136 222624 Paragonimus skrjabini miyazakii 59628 GAG|GTTAGCCACC...ATGTGTTTACAG/AGCTTGTTCATT...CACAG|GTC 0 1 70.861
145335476 GT-AG 0 1.000000099473604e-05 17541 rna-gnl|WGS:JTDE|EG68_00029 26266716 7 222760 240300 Paragonimus skrjabini miyazakii 59628 CAG|GTTAGTCTCC...CGCTTTTTACTT/TCGCTTTTTACT...TTCAG|CTG 0 1 76.562
145335477 GT-AG 0 1.000000099473604e-05 5170 rna-gnl|WGS:JTDE|EG68_00029 26266716 8 240379 245548 Paragonimus skrjabini miyazakii 59628 ACG|GTGAGTTCTA...TTTTACTTGACG/ATTGGTTTTACT...TACAG|CTA 0 1 79.856
145335478 GT-AG 0 1.000000099473604e-05 3403 rna-gnl|WGS:JTDE|EG68_00029 26266716 9 245658 249060 Paragonimus skrjabini miyazakii 59628 AAA|GTGAGAAACG...TTCACTTTGACT/GTCGTGTTCACT...TTCAG|ATT 1 1 84.459
145335479 GT-AG 0 0.0002445113208955 131 rna-gnl|WGS:JTDE|EG68_00029 26266716 10 249155 249285 Paragonimus skrjabini miyazakii 59628 GGC|GTAAGTGTTG...TTGCCTTTATTA/CCTCTTCTAATC...TTTAG|ATA 2 1 88.429
145335480 GT-AG 0 1.000000099473604e-05 36192 rna-gnl|WGS:JTDE|EG68_00029 26266716 1 158399 194590 Paragonimus skrjabini miyazakii 59628 TAG|GTAAGTCAAT...TTTTTTTTAATT/TTTTTTTTAATT...CACAG|ATA   0 5.997

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 23.93ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)