introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
8 rows where transcript_id = 26266713
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
145335446 | GT-AG | 0 | 1.000000099473604e-05 | 15049 | rna-gnl|WGS:JTDE|EG68_00028 26266713 | 1 | 677705 | 692753 | Paragonimus skrjabini miyazakii 59628 | GAG|GTTGGTCGTT...ATTTTCTAAGTT/AATTTTCTAAGT...TTCAG|ATC | 1 | 1 | 0.565 |
145335447 | GT-AG | 0 | 2.7340278932794785e-05 | 40 | rna-gnl|WGS:JTDE|EG68_00028 26266713 | 2 | 677462 | 677501 | Paragonimus skrjabini miyazakii 59628 | GAG|GTAGATTGGC...CAGTTTTTATTC/TCAGTTTTTATT...AACAG|GAT | 0 | 1 | 16.949 |
145335448 | GT-AG | 0 | 0.005360536236267 | 34 | rna-gnl|WGS:JTDE|EG68_00028 26266713 | 3 | 677319 | 677352 | Paragonimus skrjabini miyazakii 59628 | TAC|GTATGTTCAA...TCAGTTGTAATA/TCAGTTGTAATA...CTTAG|GTA | 1 | 1 | 25.747 |
145335449 | GT-AG | 0 | 1.000000099473604e-05 | 9665 | rna-gnl|WGS:JTDE|EG68_00028 26266713 | 4 | 667531 | 677195 | Paragonimus skrjabini miyazakii 59628 | GAG|GTAAGAGCGC...GTTCTCTCAATT/TGTTCTCTCAAT...GGCAG|CGA | 1 | 1 | 35.674 |
145335450 | GT-AG | 0 | 0.0518617984516444 | 3492 | rna-gnl|WGS:JTDE|EG68_00028 26266713 | 5 | 663891 | 667382 | Paragonimus skrjabini miyazakii 59628 | CAA|GTATGTTTGC...TCCTTTTTATTT/TTCCTTTTTATT...TGTAG|AAA | 2 | 1 | 47.619 |
145335451 | GT-AG | 0 | 1.000000099473604e-05 | 4327 | rna-gnl|WGS:JTDE|EG68_00028 26266713 | 6 | 659275 | 663601 | Paragonimus skrjabini miyazakii 59628 | CAG|GTTAGCTGCG...AATTACTTCTCT/ACATAAATTACT...ACCAG|GCC | 0 | 1 | 70.944 |
145335452 | GT-AG | 0 | 1.000000099473604e-05 | 2341 | rna-gnl|WGS:JTDE|EG68_00028 26266713 | 7 | 656663 | 659003 | Paragonimus skrjabini miyazakii 59628 | TTG|GTAATAGATT...TACCCTTTTGCT/CATTTGCTAATC...GCAAG|GTC | 1 | 1 | 92.817 |
145335453 | GT-AG | 0 | 1.000000099473604e-05 | 41 | rna-gnl|WGS:JTDE|EG68_00028 26266713 | 8 | 656574 | 656614 | Paragonimus skrjabini miyazakii 59628 | CAG|GTTTGTCGTT...TAATACTTATCG/CTAATACTTATC...TACAG|TTC | 1 | 1 | 96.691 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);