introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
9 rows where transcript_id = 26266706
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
145335380 | GT-AG | 0 | 1.000000099473604e-05 | 42077 | rna-gnl|WGS:JTDE|EG68_00017 26266706 | 1 | 207787 | 249863 | Paragonimus skrjabini miyazakii 59628 | GCG|GTGAGTTGGG...ACACCTCTGATT/ATGTATATGACT...AACAG|TAA | 1 | 1 | 4.995 |
145335381 | GT-AG | 0 | 1.000000099473604e-05 | 20849 | rna-gnl|WGS:JTDE|EG68_00017 26266706 | 2 | 249960 | 270808 | Paragonimus skrjabini miyazakii 59628 | GAG|GTAAGTGCAA...CGAATGTTATCT/AATCAACTGACG...TACAG|GTC | 1 | 1 | 14.217 |
145335382 | GT-AG | 0 | 1.000000099473604e-05 | 4246 | rna-gnl|WGS:JTDE|EG68_00017 26266706 | 3 | 270970 | 275215 | Paragonimus skrjabini miyazakii 59628 | CAG|GTTGGTGCTT...TACTTTTTACAT/ACTTTGCTAACG...TTCAG|ATT | 0 | 1 | 29.683 |
145335383 | GT-AG | 0 | 0.0116408989177583 | 4192 | rna-gnl|WGS:JTDE|EG68_00017 26266706 | 4 | 275405 | 279596 | Paragonimus skrjabini miyazakii 59628 | GAG|GTAACCGTGA...TTTTCCTCAATG/ATTTTCCTCAAT...TTCAG|TTA | 0 | 1 | 47.839 |
145335384 | GT-AG | 0 | 1.000000099473604e-05 | 6764 | rna-gnl|WGS:JTDE|EG68_00017 26266706 | 5 | 279693 | 286456 | Paragonimus skrjabini miyazakii 59628 | CAG|GTAATCGGAC...CCTTCTCTAATT/CCTTCTCTAATT...CACAG|CTT | 0 | 1 | 57.061 |
145335385 | GT-AG | 0 | 0.0001282551668888 | 3963 | rna-gnl|WGS:JTDE|EG68_00017 26266706 | 6 | 286524 | 290486 | Paragonimus skrjabini miyazakii 59628 | AAG|GTACGTTTGT...TTTCTCTTCCCG/CTCTTCCCGATC...TGCAG|GTC | 1 | 1 | 63.497 |
145335386 | GT-AG | 0 | 0.0017251926054262 | 9133 | rna-gnl|WGS:JTDE|EG68_00017 26266706 | 7 | 290642 | 299774 | Paragonimus skrjabini miyazakii 59628 | CAG|GTATGCAATT...CGTGTTTTATTC/GTTTTATTCACA...TGCAG|CTC | 0 | 1 | 78.386 |
145335387 | GT-AG | 0 | 1.000000099473604e-05 | 170 | rna-gnl|WGS:JTDE|EG68_00017 26266706 | 8 | 299901 | 300070 | Paragonimus skrjabini miyazakii 59628 | AAA|GTGAGTGTGT...TTATTCTTATCA/ATTATTCTTATC...AACAG|GAC | 0 | 1 | 90.49 |
145335388 | GT-AG | 0 | 6.67077441076456e-05 | 1566 | rna-gnl|WGS:JTDE|EG68_00017 26266706 | 9 | 300111 | 301676 | Paragonimus skrjabini miyazakii 59628 | TCG|GTAAGTTTGT...ACATCTTTCACT/ACATCTTTCACT...TGCAG|CTA | 1 | 1 | 94.332 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);