introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 26266691

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
145335295 GT-AG 0 1.000000099473604e-05 45 rna-gnl|WGS:JTDE|EG68_00002 26266691 1 12634 12678 Paragonimus skrjabini miyazakii 59628 ATA|GTTGGCGTAC...TTTTTTTCGAAT/GAATATCTGATT...TATAG|ACG 1 1 13.618
145335296 GT-AG 0 1.000000099473604e-05 39 rna-gnl|WGS:JTDE|EG68_00002 26266691 2 12771 12809 Paragonimus skrjabini miyazakii 59628 ATT|GTAAGTGTAA...TCGTACTAATCA/CTCGTACTAATC...TTTAG|CTT 0 1 20.903
145335297 GT-AG 0 6.112099148886308e-05 45 rna-gnl|WGS:JTDE|EG68_00002 26266691 3 12896 12940 Paragonimus skrjabini miyazakii 59628 GCT|GTAGAATACT...ATAATTTTGAAT/ATAATTTTGAAT...TATAG|GCC 2 1 27.712
145335298 GT-AG 0 1.000000099473604e-05 822 rna-gnl|WGS:JTDE|EG68_00002 26266691 4 13057 13878 Paragonimus skrjabini miyazakii 59628 TCG|GTAAGTGCTG...ATGTTATTAACA/ATGTTATTAACA...CACAG|ACC 1 1 36.896
145335299 GT-AG 0 1.000000099473604e-05 4640 rna-gnl|WGS:JTDE|EG68_00002 26266691 5 14208 18847 Paragonimus skrjabini miyazakii 59628 GAG|GTAAGGGACA...TTACTGTTAGCC/TTCCTGCTCATA...TGCAG|GTG 0 1 62.945
145335300 GT-AG 0 0.0003270224271867 12014 rna-gnl|WGS:JTDE|EG68_00002 26266691 6 18962 30975 Paragonimus skrjabini miyazakii 59628 CGA|GTAAGCGTTT...GTCTTTTTACAT/TGTCTTTTTACA...GTTAG|ATT 0 1 71.971

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);