WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 26241367

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
145216240	GT-AG	1.000000099473604e-05	12129	rna-gnl\|WGS:LUCH\|PHET_00023 26241367	1	503593	515721	Paragonimus heterotremus 100268	CAA\|GTTAGTAAGG...CACTTCTTCACT/CACTTCTTCACT...ATCAG\|TGT	2	1	1.503
145216241	GT-AG	0.0001319751072659	134	rna-gnl\|WGS:LUCH\|PHET_00023 26241367	2	503443	503576	Paragonimus heterotremus 100268	AAG\|GTAAATTTTT...TTGCTTTTATAC/TTTGCTTTTATA...CTCAG\|ATA	0	1	2.918
145216242	GT-AG	3.536604313380396e-05	7472	rna-gnl\|WGS:LUCH\|PHET_00023 26241367	3	495881	503352	Paragonimus heterotremus 100268	TCA\|GTAAGTAGCC...TCTCCCTTGTTT/GAATGACTAAGG...TGCAG\|CAA	0	1	10.875
145216243	GT-AG	1.000000099473604e-05	2178	rna-gnl\|WGS:LUCH\|PHET_00023 26241367	4	493459	495636	Paragonimus heterotremus 100268	TAC\|GTGAGTTAAC...AATTCATTAATT/CGATAATTCATT...CAAAG\|GTA	1	1	32.449
145216244	GT-AG	1.0379762738688471e-05	1548	rna-gnl\|WGS:LUCH\|PHET_00023 26241367	5	491696	493243	Paragonimus heterotremus 100268	TAC\|GTGAGTTTTG...TTCTTCTTCATT/TTCTTCTTCATT...TACAG\|AAC	0	1	51.459
145216245	GT-AG	1.000000099473604e-05	2608	rna-gnl\|WGS:LUCH\|PHET_00023 26241367	6	488926	491533	Paragonimus heterotremus 100268	CAG\|GTAAGGATTT...CTTTTCTTAAGT/TTAAAATTTATT...TTCAG\|GCA	0	1	65.782
145216246	GT-AG	0.0006500650904189	4142	rna-gnl\|WGS:LUCH\|PHET_00023 26241367	7	484610	488751	Paragonimus heterotremus 100268	AAT\|GTACGCAATC...TAATCCTTCCAT/GCAGTTATAATC...TATAG\|CTC	0	1	81.167
145216247	GT-AG	1.000000099473604e-05	2369	rna-gnl\|WGS:LUCH\|PHET_00023 26241367	8	482123	484491	Paragonimus heterotremus 100268	TTT\|GTGAGTTTCA...CGTGCTTTTATG/CGTGCTTTTATG...TTCAG\|ACC	1	1	91.6

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);