introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 26158258

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Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
144760590 GT-AG 0 3.824211767548488e-05 522 rna-XM_013286544.1 26158258 2 352755 353276 Papilio polytes 76194 CTA|GTAAGTGCTT...GTTCTTTTAATT/GTTCTTTTAATT...ACCAG|TGA 1 1 30.703
144760591 GT-AG 0 1.000000099473604e-05 482 rna-XM_013286544.1 26158258 3 353438 353919 Papilio polytes 76194 AAG|GTAAGACGAT...CTTCCTCTAATA/AATATACTCATT...ATTAG|GAT 0 1 43.281
144760592 GT-AG 0 1.000000099473604e-05 711 rna-XM_013286544.1 26158258 4 354122 354832 Papilio polytes 76194 CAT|GTAAGTGAGA...GTTTTTTTATTT/AGTTTTTTTATT...TCCAG|GTA 1 1 59.062
144760593 GT-AG 0 1.000000099473604e-05 429 rna-XM_013286544.1 26158258 5 355006 355434 Papilio polytes 76194 CAG|GTGAGAGAAA...TTTAATTTAACT/TTTAATTTAACT...AACAG|AAA 0 1 72.578
144760594 GT-AG 0 1.000000099473604e-05 514 rna-XM_013286544.1 26158258 6 355564 356077 Papilio polytes 76194 AAG|GTAGGTATTC...ATAATAATAATT/ATAATAATAATT...TTTAG|TAC 0 1 82.656
144760658 GT-AG 0 6.245454982410547e-05 2952 rna-XM_013286544.1 26158258 1 349648 352599 Papilio polytes 76194 ACT|GTAAGTACTT...TGACCTTTAAAA/TAATATTTGACC...TCCAG|GAC   0 18.906

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);