introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 26158207

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Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
144760315 GT-AG 0 6.17338472529658e-05 64 rna-XM_013290586.1 26158207 2 949472 949535 Papilio polytes 76194 CGG|GTTTGTTAAT...TGTTACTTAATG/TTGTTACTTAAT...TTCAG|TTT 1 1 43.276
144760316 GT-AG 0 0.0001620259198123 104 rna-XM_013290586.1 26158207 3 949583 949686 Papilio polytes 76194 CGT|GTAAGTCTTT...CACATTTTAATT/TATTTTTTTACA...CCAAG|GAT 0 1 46.272
144760317 GT-AG 0 4.8020924504204506e-05 491 rna-XM_013290586.1 26158207 4 949910 950400 Papilio polytes 76194 TGC|GTAAGTTCAT...TTGTCTGTAAAT/TTTCTAGTAACT...TTTAG|GTA 1 1 60.484
144760318 GT-AG 0 1.000000099473604e-05 105 rna-XM_013290586.1 26158207 5 950577 950681 Papilio polytes 76194 CAG|GTGAGTTTGC...ATAAACTTAATA/TATAAACTTAAT...TACAG|ACT 0 1 71.702
144760319 GT-AG 0 1.000000099473604e-05 369 rna-XM_013290586.1 26158207 6 950833 951201 Papilio polytes 76194 AAG|GTAAGATAAA...AATTTATTATTA/TAGTAATTTATT...CCTAG|GTA 1 1 81.326
144760320 GT-AG 0 3.477962355367744e-05 375 rna-XM_013290586.1 26158207 7 951342 951716 Papilio polytes 76194 CAG|GTATAGTAAC...AATTCTTTTATG/ACATGTCTAATT...TTCAG|GAC 0 1 90.249
144760422 GT-AG 0 1.000000099473604e-05 313 rna-XM_013290586.1 26158207 1 949071 949383 Papilio polytes 76194 ATA|GTAAGTAAAT...TAAATGTTAAAT/TAAATGTTAAAT...TACAG|GAT   0 37.859

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);