WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 26158204

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
144760298	GT-AG	1.000000099473604e-05	800	rna-XM_013284873.1 26158204	1	541184	541983	Papilio polytes 76194	ATG\|GTGAGTGTAT...TTTTGTTTATTT/GTTTTGTTTATT...TCCAG\|ATA	1	1	5.942
144760299	GT-AG	1.000000099473604e-05	1012	rna-XM_013284873.1 26158204	2	542117	543128	Papilio polytes 76194	CTT\|GTGAGTAATT...GTTACGTTTGTT/AGATAGTTAAGT...TTCAG\|TAC	2	1	18.292
144760300	GT-AG	0.0002582728920451	1564	rna-XM_013284873.1 26158204	3	543294	544857	Papilio polytes 76194	TGG\|GTAAGTTTTT...TGTTCTTTACTA/ATAATTTTTATT...TCAAG\|TTG	2	1	33.612
144760301	GT-AG	9.8771569348033e-05	969	rna-XM_013284873.1 26158204	4	544956	545924	Papilio polytes 76194	TTT\|GTAAGTTGGA...CGCATTTTAATG/ATGTGTTTAAAT...TTTAG\|GTG	1	1	42.711
144760302	GT-AG	1.000000099473604e-05	1181	rna-XM_013284873.1 26158204	5	545989	547169	Papilio polytes 76194	AAG\|GTAAGGATAT...TTTTTTTTAACT/TTTTTTTTAACT...ACCAG\|GGT	2	1	48.654
144760303	GT-AG	2.4057787387958217e-05	538	rna-XM_013284873.1 26158204	6	547384	547921	Papilio polytes 76194	ACA\|GTAAGTGCGA...CACTTTTTAATT/CACTTTTTAATT...TTCAG\|ATA	0	1	68.524
144760304	GT-AG	1.000000099473604e-05	1393	rna-XM_013284873.1 26158204	7	548045	549437	Papilio polytes 76194	GAG\|GTGAGTAGAG...ATTTTTTTCACA/ATTTTTTTCACA...TTCAG\|ACG	0	1	79.944
144760305	GT-AG	1.000000099473604e-05	2006	rna-XM_013284873.1 26158204	8	549600	551605	Papilio polytes 76194	CAG\|GTAAATATAT...GTAAGATTAGTA/AGATTAGTAAGA...CATAG\|GAA	0	1	94.986

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);