WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 26158198

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
144760272	GT-AG	1.000000099473604e-05	18913	rna-XM_013280188.1 26158198	1	804137	823049	Papilio polytes 76194	TCG\|GTAAGTCGTA...GATATCTAATTG/AGATATCTAATT...TACAG\|AAC	1	1	18.565
144760273	GT-AG	0.0003780345757885	4730	rna-XM_013280188.1 26158198	2	823138	827867	Papilio polytes 76194	ATC\|GTAAGTTACA...TCTATCTTATTT/TTTATGCTCATT...TACAG\|AGA	2	1	25.992
144760274	GT-AG	1.000000099473604e-05	1329	rna-XM_013280188.1 26158198	3	827944	829272	Papilio polytes 76194	TCG\|GTGAGTTTAA...AGATTATTAAAA/ATAGGATTCAAT...TCCAG\|GAG	0	1	32.405
144760275	GT-AG	0.0006515611287327	9563	rna-XM_013280188.1 26158198	4	829376	838938	Papilio polytes 76194	AAC\|GTAAGTTTCT...TGTATCTTATTA/ATGTATCTTATT...TCCAG\|TGA	1	1	41.097
144760276	GT-AG	1.000000099473604e-05	397	rna-XM_013280188.1 26158198	5	839120	839516	Papilio polytes 76194	CAG\|GTGAGATTCA...TAGACCTCAGTT/TGTGTGTTGAAT...TTCAG\|ATT	2	1	56.371
144760277	GT-AG	1.000000099473604e-05	1887	rna-XM_013280188.1 26158198	6	839647	841533	Papilio polytes 76194	CAG\|GTAAATTACC...CATAATTTAATG/CATAATTTAATG...TACAG\|CTG	0	1	67.342
144760278	GT-AG	0.0002388217674684	278	rna-XM_013280188.1 26158198	7	841728	842005	Papilio polytes 76194	GGG\|GTAAGTTTTT...AACGCTTTAATA/TTTATGCTAACG...TACAG\|AAT	2	1	83.713
144760279	GT-AG	1.000000099473604e-05	533	rna-XM_013280188.1 26158198	8	842157	842689	Papilio polytes 76194	CCA\|GTGAGTATAC...GTTACTTTAGTA/ACTAGTGTTACT...CGCAG\|ATC	0	1	96.456

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);