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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

15 rows where transcript_id = 2569318

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id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
13843031 GT-AG 0 1.000000099473604e-05 469 rna-XM_026082885.1 2569318 1 12245767 12246235 Apteryx rowi 308060 CGG|GTGGGGATCT...AAGTCTTTGTCA/GTCTTTGTCAAG...AGCAG|GCA 2 1 2.427
13843032 GT-AG 0 0.0002383688699416 3596 rna-XM_026082885.1 2569318 2 12246351 12249946 Apteryx rowi 308060 CAG|GTATGTTCCA...CGTCCCCGAGCT/CGTCTGTCCATC...TGCAG|ATG 0 1 9.77
13843033 GT-AG 0 1.000000099473604e-05 133 rna-XM_026082885.1 2569318 3 12250105 12250237 Apteryx rowi 308060 CTG|GTACGTGGGG...ATGGCCCTGCTG/TGGGTGCTCATG...TGCAG|GTT 2 1 19.86
13843034 GT-AG 0 1.000000099473604e-05 142 rna-XM_026082885.1 2569318 4 12250350 12250491 Apteryx rowi 308060 CTG|GTAAGCGATT...ACTGTCTTCTCC/CTGTCAGTCACT...CCCAG|ATC 0 1 27.011
13843035 GT-AG 0 1.000000099473604e-05 345 rna-XM_026082885.1 2569318 5 12250543 12250887 Apteryx rowi 308060 AAG|GTAGGGGCAC...TCTTCCTTTTCC/TTTTCCTCCAGC...TGCAG|ATC 0 1 30.268
13843036 GT-AG 0 1.000000099473604e-05 109 rna-XM_026082885.1 2569318 6 12250975 12251083 Apteryx rowi 308060 GAG|GTGAGGGACC...TCTCCTTTTGCC/TGCTGTCTGACC...TGCAG|GTT 0 1 35.824
13843037 GT-AG 0 1.000000099473604e-05 406 rna-XM_026082885.1 2569318 7 12251240 12251645 Apteryx rowi 308060 AAG|GTGAGCGGCT...GTTTTCTTGTTG/AGACAACAGAGT...TGCAG|GGA 0 1 45.785
13843038 GT-AG 0 1.000000099473604e-05 348 rna-XM_026082885.1 2569318 8 12251738 12252085 Apteryx rowi 308060 CCA|GTAAGAGCTG...CTGCACTTGAAG/TTTAATGTTACC...CACAG|GCT 2 1 51.66
13843039 GT-AG 0 1.000000099473604e-05 140 rna-XM_026082885.1 2569318 9 12252171 12252310 Apteryx rowi 308060 AAG|GTGAGGAGAG...AAACTCTTCTTG/CAGTTCCTCAGG...TGCAG|ATG 0 1 57.088
13843040 GT-AG 0 1.000000099473604e-05 239 rna-XM_026082885.1 2569318 10 12252403 12252641 Apteryx rowi 308060 AAG|GTGAGAGCAG...GAGCTTTCAGCC/GCCTGTCTCATG...TGCAG|GTA 2 1 62.963
13843041 GT-AG 0 1.000000099473604e-05 140 rna-XM_026082885.1 2569318 11 12252721 12252860 Apteryx rowi 308060 CAG|GTGAGCCTGG...ACTCTCCTGACT/ACTCTCCTGACT...CCCAG|AAC 0 1 68.008
13843042 GT-AG 0 1.000000099473604e-05 75 rna-XM_026082885.1 2569318 12 12253010 12253084 Apteryx rowi 308060 CAG|GTGAGCAGGC...AGCCTCTTCCTC/AGGAGCATGATC...CACAG|CTT 2 1 77.522
13843043 GT-AG 0 1.000000099473604e-05 121 rna-XM_026082885.1 2569318 13 12253161 12253281 Apteryx rowi 308060 ATG|GTGTGTGTGG...CCTGCCTGGCCT/CTCTGTGTGACA...TGCAG|AAA 0 1 82.375
13843044 GT-AG 0 1.000000099473604e-05 186 rna-XM_026082885.1 2569318 14 12253372 12253557 Apteryx rowi 308060 AAG|GTAAATGGCA...TGGCACTGAGAG/CTGGCACTGAGA...TCCAG|GTG 0 1 88.123
13843045 GT-AG 0 1.000000099473604e-05 247 rna-XM_026082885.1 2569318 15 12253660 12253906 Apteryx rowi 308060 AAG|GTAGGGCTGA...CCTGCCTCCACC/CTGGCACTGACC...TGCAG|GGA 0 1 94.636

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 29.384ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)