introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
15 rows where transcript_id = 2569318
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
13843031 | GT-AG | 0 | 1.000000099473604e-05 | 469 | rna-XM_026082885.1 2569318 | 1 | 12245767 | 12246235 | Apteryx rowi 308060 | CGG|GTGGGGATCT...AAGTCTTTGTCA/GTCTTTGTCAAG...AGCAG|GCA | 2 | 1 | 2.427 |
13843032 | GT-AG | 0 | 0.0002383688699416 | 3596 | rna-XM_026082885.1 2569318 | 2 | 12246351 | 12249946 | Apteryx rowi 308060 | CAG|GTATGTTCCA...CGTCCCCGAGCT/CGTCTGTCCATC...TGCAG|ATG | 0 | 1 | 9.77 |
13843033 | GT-AG | 0 | 1.000000099473604e-05 | 133 | rna-XM_026082885.1 2569318 | 3 | 12250105 | 12250237 | Apteryx rowi 308060 | CTG|GTACGTGGGG...ATGGCCCTGCTG/TGGGTGCTCATG...TGCAG|GTT | 2 | 1 | 19.86 |
13843034 | GT-AG | 0 | 1.000000099473604e-05 | 142 | rna-XM_026082885.1 2569318 | 4 | 12250350 | 12250491 | Apteryx rowi 308060 | CTG|GTAAGCGATT...ACTGTCTTCTCC/CTGTCAGTCACT...CCCAG|ATC | 0 | 1 | 27.011 |
13843035 | GT-AG | 0 | 1.000000099473604e-05 | 345 | rna-XM_026082885.1 2569318 | 5 | 12250543 | 12250887 | Apteryx rowi 308060 | AAG|GTAGGGGCAC...TCTTCCTTTTCC/TTTTCCTCCAGC...TGCAG|ATC | 0 | 1 | 30.268 |
13843036 | GT-AG | 0 | 1.000000099473604e-05 | 109 | rna-XM_026082885.1 2569318 | 6 | 12250975 | 12251083 | Apteryx rowi 308060 | GAG|GTGAGGGACC...TCTCCTTTTGCC/TGCTGTCTGACC...TGCAG|GTT | 0 | 1 | 35.824 |
13843037 | GT-AG | 0 | 1.000000099473604e-05 | 406 | rna-XM_026082885.1 2569318 | 7 | 12251240 | 12251645 | Apteryx rowi 308060 | AAG|GTGAGCGGCT...GTTTTCTTGTTG/AGACAACAGAGT...TGCAG|GGA | 0 | 1 | 45.785 |
13843038 | GT-AG | 0 | 1.000000099473604e-05 | 348 | rna-XM_026082885.1 2569318 | 8 | 12251738 | 12252085 | Apteryx rowi 308060 | CCA|GTAAGAGCTG...CTGCACTTGAAG/TTTAATGTTACC...CACAG|GCT | 2 | 1 | 51.66 |
13843039 | GT-AG | 0 | 1.000000099473604e-05 | 140 | rna-XM_026082885.1 2569318 | 9 | 12252171 | 12252310 | Apteryx rowi 308060 | AAG|GTGAGGAGAG...AAACTCTTCTTG/CAGTTCCTCAGG...TGCAG|ATG | 0 | 1 | 57.088 |
13843040 | GT-AG | 0 | 1.000000099473604e-05 | 239 | rna-XM_026082885.1 2569318 | 10 | 12252403 | 12252641 | Apteryx rowi 308060 | AAG|GTGAGAGCAG...GAGCTTTCAGCC/GCCTGTCTCATG...TGCAG|GTA | 2 | 1 | 62.963 |
13843041 | GT-AG | 0 | 1.000000099473604e-05 | 140 | rna-XM_026082885.1 2569318 | 11 | 12252721 | 12252860 | Apteryx rowi 308060 | CAG|GTGAGCCTGG...ACTCTCCTGACT/ACTCTCCTGACT...CCCAG|AAC | 0 | 1 | 68.008 |
13843042 | GT-AG | 0 | 1.000000099473604e-05 | 75 | rna-XM_026082885.1 2569318 | 12 | 12253010 | 12253084 | Apteryx rowi 308060 | CAG|GTGAGCAGGC...AGCCTCTTCCTC/AGGAGCATGATC...CACAG|CTT | 2 | 1 | 77.522 |
13843043 | GT-AG | 0 | 1.000000099473604e-05 | 121 | rna-XM_026082885.1 2569318 | 13 | 12253161 | 12253281 | Apteryx rowi 308060 | ATG|GTGTGTGTGG...CCTGCCTGGCCT/CTCTGTGTGACA...TGCAG|AAA | 0 | 1 | 82.375 |
13843044 | GT-AG | 0 | 1.000000099473604e-05 | 186 | rna-XM_026082885.1 2569318 | 14 | 12253372 | 12253557 | Apteryx rowi 308060 | AAG|GTAAATGGCA...TGGCACTGAGAG/CTGGCACTGAGA...TCCAG|GTG | 0 | 1 | 88.123 |
13843045 | GT-AG | 0 | 1.000000099473604e-05 | 247 | rna-XM_026082885.1 2569318 | 15 | 12253660 | 12253906 | Apteryx rowi 308060 | AAG|GTAGGGCTGA...CCTGCCTCCACC/CTGGCACTGACC...TGCAG|GGA | 0 | 1 | 94.636 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);