WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 2569314

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
13843004	GT-AG	1.000000099473604e-05	5165	rna-XM_026057038.1 2569314	1	10994342	10999506	Apteryx rowi 308060	TGG\|GTAAGAAATG...TGTCGCTTAATT/TGTCGCTTAATT...ACCAG\|CGG	2	1	8.177
13843005	GT-AG	1.000000099473604e-05	1095	rna-XM_026057038.1 2569314	2	10999605	11000699	Apteryx rowi 308060	TAG\|GTAGGTTCAG...TTTCTTTTTGCT/CTGCGACTCACG...AGAAG\|TGA	1	1	14.295
13843006	GT-AG	1.000000099473604e-05	1741	rna-XM_026057038.1 2569314	3	11000828	11002568	Apteryx rowi 308060	CAG\|GTGAGAATAA...TGTGCCGTGTCA/GTCACACTGATG...TGCAG\|TTT	0	1	22.285
13843007	GT-AG	1.000000099473604e-05	2949	rna-XM_026057038.1 2569314	4	11002673	11005621	Apteryx rowi 308060	CCG\|GTTAGTCTCT...ACCCTGTTGATG/TATGTTCTCATG...TGCAG\|GAA	2	1	28.777
13843008	GT-AG	0.0048749662987175	1813	rna-XM_026057038.1 2569314	5	11005780	11007592	Apteryx rowi 308060	ATG\|GTATGTTCAG...TTTTTCTTTTCT/CTTCTTGCTATT...TGCAG\|TGA	1	1	38.639
13843009	GT-AG	2.7314277062359905e-05	835	rna-XM_026057038.1 2569314	6	11007665	11008499	Apteryx rowi 308060	GAG\|GTACGTCTGG...TCTGCTTTCTCT/AGTGTTTTGAGG...TCCAG\|ATG	1	1	43.134
13843010	GT-AG	1.000000099473604e-05	694	rna-XM_026057038.1 2569314	7	11008638	11009331	Apteryx rowi 308060	GCG\|GTAAGGATCT...CTTTCCTCAACG/GCTTTCCTCAAC...TTAAG\|ATG	1	1	51.748
13843011	GT-AG	0.0015577731526739	220	rna-XM_026057038.1 2569314	8	11009455	11009674	Apteryx rowi 308060	CAG\|GTATATCCCG...TGATCCTTGTCT/CGCTCGCTGATC...TTCAG\|CTT	1	1	59.426

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);