WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 2569297

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
13842838	GT-AG	1.000000099473604e-05	1381	rna-XM_026090913.1 2569297	1	5953328	5954708	Apteryx rowi 308060	CTG\|GTGAGTGGCA...TGTTTTTTAAAA/AATTTTATCATT...TGCAG\|CTG	2	1	11.985
13842839	GT-AG	1.000000099473604e-05	607	rna-XM_026090913.1 2569297	2	5954891	5955497	Apteryx rowi 308060	AAG\|GTGGGTGAGA...AGTTCCTTGTTT/CACATTCTCATC...TACAG\|GAC	1	1	21.723
13842840	GT-AG	1.000000099473604e-05	306	rna-XM_026090913.1 2569297	3	5955702	5956007	Apteryx rowi 308060	AAG\|GTAGGTAAGA...ATTGCTATATTC/GCTATATTCATG...TGCAG\|AAC	1	1	32.638
13842841	GT-AG	1.000000099473604e-05	954	rna-XM_026090913.1 2569297	4	5956196	5957149	Apteryx rowi 308060	CTG\|GTAAGAGCTA...CTACATTTAACA/CTACATTTAACA...AATAG\|ATC	0	1	42.697
13842842	GT-AG	1.000000099473604e-05	127	rna-XM_026090913.1 2569297	5	5957313	5957439	Apteryx rowi 308060	AAG\|GTCTGGAACT...ATTTGCTTATAT/CATTTGCTTATA...TTCAG\|GCA	1	1	51.418
13842843	GT-AG	0.0093184320819191	92	rna-XM_026090913.1 2569297	6	5957665	5957756	Apteryx rowi 308060	ATG\|GTAACCCAGC...TATGTTTTAATC/TATGTTTTAATC...TACAG\|GGG	1	1	63.456
13842844	GT-AG	1.000000099473604e-05	738	rna-XM_026090913.1 2569297	7	5957889	5958626	Apteryx rowi 308060	CTG\|GTAAGAGATG...AGCTTCTTGACC/AGCTTCTTGACC...TACAG\|GTG	1	1	70.519
13842845	GT-AG	1.000000099473604e-05	600	rna-XM_026090913.1 2569297	8	5958723	5959322	Apteryx rowi 308060	AAG\|GTAAATCAAA...TACCTTTTATTC/AGTATGCTCACA...AACAG\|GCA	1	1	75.655

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);